Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2594 183 4e-41 >seq2594 Length=7326867 Score = 183 bits (202), Expect = 4e-41 Identities = 797/1237 (64%), Gaps = 44/1237 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||||| ||| | || | || || || ||||| |||||||||||| ||| | Sbjct 139894 CCACAGCATATGTTAATGAGAGTATCTATTGGAATACATGGTGAAGATATTGATGCTGCT 139953 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGG----TATGTTCATCCACGCAACACCAACCCT 111727 | | |||||| | | || || ||| || | |||||||| ||||| || Sbjct 139954 ATCAACACATACAATTTATTATC---TGAAAAATATTTT-ACCCACGCAAGTCCAACTCT 140009 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 ||| |||| || |||||||| || |||| ||||| ||| |||||| || || Sbjct 140010 CTTTGCTGCTGCAACCCCAAGACCTCAGTTGTCTTCCTGTTTTCTTGTTGCAATGAAAGA 140069 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || || | || || || | |||| | | ||||||| || ||||||| || Sbjct 140070 TGACAGCATTGAGGGGATATATGACACTTTAAAGCAATGTGCATTGATTTCAAAGTCAGC 140129 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT--TAGAGGT 111905 ||||||||| || | || | ||| | ||||| || || | | ||| | || Sbjct 140130 TGGTGGTATTGGTGTTCATGTGCATTGCATTAGAGCAAA--AGGCACCTATATTGCTGGA 140187 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 |||||||| ||| ||||| || |||| ||| | || || | ||| ||| || | Sbjct 140188 ACAAATGGAGTTTCAAATGGTGTTGTTCCTATGTTGCGTGTTTACAACAACACTGCCAGA 140247 Query 111966 TATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 ||||| | |||| ||| | || ||| | | || ||||| | ||||| ||| Sbjct 140248 TATGTTGATCAAGGTGGAAATAAACGACCAGGAGCCTTTGCTGTCTACTTAGAGCCTTGG 140307 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 || || ||||| | || || | || ||| || || || | ||||| | | | Sbjct 140308 CATGCAGATATATTCGAATTTTTGGATTTGAAAAAGAATCATGGCAAAGAGGAAGT-CAG 140366 Query 112083 TGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 || | || || |||| ||| | ||||| |||||| | || ||||| | |||||| | Sbjct 140367 AGCAAGAGAACTGTTCTATGCTTTGTGGATCCCAGATTTATTTATGAAACGCGTTGAGAA 140426 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200 | || | ||| ||| | || || | | | || || || | || || | || Sbjct 140427 AAATGAAGACTGGAGTCTTATGTGCCCTCATGATTCTCCTGGACTAGCAGACTGTTG-GG 140485 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA---GGAAGAAAGTCGGGCGACTGCGA 112257 ||||||| ||||| || ||||| ||| || || |||| || || | | || | Sbjct 140486 GTGAGGAATTTGAGGCACTCTATGAAAAATATGAACAGGAAAAACGTTATGTCAA-GCAA 140544 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 || |||| | || | |||||||||||| | || | ||| || ||||| ||| Sbjct 140545 --GTTAAAGCT-CAAATACTATGGAAAGCTATTATAGAGGCACAAGTTGAAACTGGCACA 140601 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 ||||||||||| || || || |||||||| |||||||||||| || |||||||| Sbjct 140602 CCATATATGCTATATAAGGATGCCTGTAATAGAAAGAGTAATCAGAAAAATTTGGGCACA 140661 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 || ||| | |||| | ||||||||||| | || | ||| |||||| || || Sbjct 140662 ATTAAGTGCAGCAACTTGTGTACAGAAATTGTTGAGTACACATCTGCAGATGAAACAGCA 140721 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATT 112495 ||||| || | ||||| || || | | || |||| || || || ||| |||| Sbjct 140722 GTGTGCAATTTGGCATCCATTGCGTTAAATATGTTTGTGAAT---GATGATAAA-ACATA 140777 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 ||| | || || | ||||| || |||| |||||| | ||||| || | | |||| Sbjct 140778 CAATTTTATTAAGCTTAAGGAAGTGACTAAAATTGTCACTCAGAACCTGAATAAAATTAT 140837 Query 112556 TGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 |||| || ||||| || || ||| || ||||| ||||||||||| | || | Sbjct 140838 TGATGTCAACTTTTATCCAGTGCCAGA-AGCAAAGAAATCAAATATGAGACATAGACCTA 140896 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT--TGA 112672 |||| | ||||| || ||| | || || ||| | | | | |||||| | | Sbjct 140897 TTGGGATTGGTGTGCAGGGTTTAGCTGACACATT-----TGTATTGATGCGCATTCCTTA 140951 Query 112673 TTCCGACGAA---GCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 | ||||| || | || | ||| | |||||||| || || ||| | | || Sbjct 140952 TGAAAACGAAAGTGCTATTAAACTGAATCAACAAATATTTGAAACTATTTATTATGGTGC 141011 Query 112730 TCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 | | || || |||| || |||||||| ||||| ||||||||| | ||| ||| Sbjct 141012 TTTAGAAGCCAGTTGCGAATTGGCAGAAAAATATGGTGTATATGAAACTTATGAAGGTAG 141071 Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 ||| | | ||||| | | || | ||| |||||| Sbjct 141072 TCCTGTTAGTCAAGGTATATTACAGTATGAGATGTGG 141108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620682319894960