Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq142 129 7e-25 seq2594 100 3e-16 seq5009 82.4 9e-11 >seq142 Length=7807734 Score = 129 bits (142), Expect = 7e-25 Identities = 138/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||||| ||| || || ||||| ||||| ||||||||||||||||||||| ||||| Sbjct 5995010 TCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCTTC 5994951 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCG 119636 ||||| ||||||| | |||||| || |||||||||||||| || || ||||| ||| Sbjct 5994950 AGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGGCG 5994891 Query 119637 AATAGACGCTCAGCAAAAGGTCGAGACT---TGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 | | ||| ||| |||| | | || || ||| ||||| |||||||||| ||| Sbjct 5994890 ACGATACGTTCACCAAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTCAGCC 5994831 Query 119694 TT 119695 || Sbjct 5994830 TT 5994829 >seq2594 Length=7326867 Score = 100 bits (110), Expect = 3e-16 Identities = 193/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 109561 TTTTGGCT--AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCA 109618 ||||| || ||| ||||||||||| || ||||| | | |||| || | ||||| || Sbjct 141463 TTTTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCCTGATTTCTTTAGGAATAGCCT 141404 Query 109619 CGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGA 109678 | || ||||| ||||| ||| | | | ||||| | ||||| |||| ||| | Sbjct 141403 CAATATTTTGTATAGATCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACA 141344 Query 109679 GACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCA 109737 | | | | | | | ||| |||||| ||| | || ||||| |||||| |||| Sbjct 141343 AATCTGCTTCTGTTAAATCCCGCAACAA-ATGATGATTTACCACTTGAAATTCTCCAGAC 141285 Query 109738 AGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGG 109797 ||| |||| |||| || |||| ||| | || || || | |||||||| || || Sbjct 141284 AGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGT 141225 Query 109798 ATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAG 109838 ||||| ||||||||||| || ||||| || || || ||||| Sbjct 141224 ATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAG 141184 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 ||||| || || | ||||||||| | || || ||| ||||| || | |||||| Sbjct 140744 GCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATTTCT 140685 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT-CGATTTGGAGTTGCA 110405 |||||||||||| | |||||| ||||| || |||||||| | ||| | || || Sbjct 140684 GTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTA-TTACA 140626 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 ||||||||||| ||||| ||||| || |||||||| |||| || | ||| || || Sbjct 140625 GGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTT 140566 Query 110466 CCATA 110470 ||||| Sbjct 140565 CCATA 140561 >seq5009 Length=10104426 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| ||| | Sbjct 9193187 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 9193246 Query 136775 TTGGGAACAGCTTTTAGATATATTTTTTGTA 136805 | || ||| ||||| |||| ||||| || Sbjct 9193247 TGGGCCACATCTTTT-TTTATACTTTTTTTA 9193276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588918994485400