Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2594 174 2e-38 >seq2594 Length=7326867 Score = 174 bits (192), Expect = 2e-38 Identities = 621/957 (65%), Gaps = 24/957 (3%) Strand=Plus/Minus Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 ||| | |||| || || | ||| || ||||| | ||||||||||| |||| |||||| Sbjct 140937 CAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATT 140878 Query 106327 AGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 106385 || || || ||| || |||||||| || ||||| | | || || || | Sbjct 140877 TGATTTCTTTGCT-TCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCT 140819 Query 106386 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT---CTT 106442 || ||||| || || | ||| | ||| || ||| |||| || || | | | Sbjct 140818 GAGTGACAATTTTAGTCACTTCCTTAAGCTT-----AAT-AAAATTGTATGTTTTATCAT 140765 Query 106443 CATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 106502 |||| ||| || | | || || |||||||||||||| || || || ||||| | Sbjct 140764 CATTCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAG 140705 Query 106503 CTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 106562 ||||||||| | ||||||||||||||||||| | |||||| || |||||||| || | Sbjct 140704 ATGTGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCT 140645 Query 106563 GGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCT 106622 | ||||||||| | || || |||||||| || ||||| || || || || || || | Sbjct 140644 GATTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTT 140585 Query 106623 GTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGC---CCGT 106678 ||| || | ||| || ||||| | || | ||| | | | || ||| | ||| Sbjct 140584 GTGCCTCTATAATAGCTTTCCATAGTATTTG-AGCT--TTAACTTGC-TTGACATAACGT 140529 Query 106679 CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGA 106738 ||| || || ||| ||||| || ||||| ||||||||| ||| | || Sbjct 140528 TTTTCCTGTTCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAGTCTGCTAGT 140469 Query 106739 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || || | | | || || | |||| ||| | || | |||||| || ||||| Sbjct 140468 CCAGGAGAATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATA 140409 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACC 106857 || | ||||| ||||||| | | || || |||| | | | || | || || | || Sbjct 140408 AATAAATCTGGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTGA-CTTCCTCTTTGCC 140350 Query 106858 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 106917 || || | || || | || || | ||||| || ||||| ||||| | ||||| Sbjct 140349 ATGATTCTTTTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGAC 140290 Query 106918 TGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 || | | ||| ||| | ||| |||||| ||||| | || ||| ||| | Sbjct 140289 AGCAAAGGCTCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTA 140230 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034 || || | ||| |||| || ||||| ||| |||||||| || |||| | Sbjct 140229 AACACGCAACATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCC 140170 Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094 || ||||| | ||| | || | |||||||| ||||| ||||||| || || Sbjct 140169 TTTTGCTCTAATGCAATGCACATGAACACCAATACCACCAGCTGACTTTGAAATCAATGC 140110 Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 ||| | | | | ||| |||| || || | || ||| || || | || | ||| || Sbjct 140109 ACATTGCTTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAA 140050 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 107211 || |||| ||| |||||||| || ||||| ||||| ||||| ||||||| Sbjct 140049 ACAGGAAGACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTG 139993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589923697233320