Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2594 491 5e-134 seq142 111 2e-19 seq2271 87.8 2e-12 >seq2594 Length=7326867 Score = 491 bits (544), Expect = 5e-134 Identities = 1184/1786 (66%), Gaps = 30/1786 (2%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || |||||||||| || | ||| || | ||| || |||||||||||||| ||| Sbjct 141656 TTATCTACAGTAAACTGGATAGCATTGGCAGCAGGTTTAGTACGTAAATAATACATTCCA 141597 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 ||||| ||||| | ||||| |||| ||||| ||| || ||||| ||| |||| Sbjct 141596 GTCTTCAAACCCATTTTCCATGCATAAAAATGTATAGACGTCAATTTGCCGTAATTAGGG 141537 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 | | | ||| ||||| | || || |||||||| |||||||| |||||||| || ||| Sbjct 141536 GCAGCCACATGTATATTGAATGACTGGCTCTGATCTATAAATGCTCCTCTATCTGCGGCC 141477 Query 47154 ATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 || | | | | |||| || |||||||| || |||||||| | | | || | Sbjct 141476 ATTTGAATAGTTGT--TTTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCCTGATTT 141419 Query 47212 CTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 ||| || | | | | ||||||| |||||||| || | ||||| |||||| | Sbjct 141418 CTTTAGGAATAGCCTCAATATTTTGTATAGATCCATTATTATGAATAATGAGGTTTTTCA 141359 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 || | ||| | | | ||| ||||| || | |||| |||| || | || Sbjct 141358 TGTCTTCATCCCACAAATCTGCTTCTGTTAAATCCCGCAACAAATGATGATTTACCACTT 141299 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 ||||||||||||| ||||||| | || |||||| ||| | || || | |||| Sbjct 141298 GAAATTCTCCAGACAGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATT 141239 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 |||| || |||| ||||||||||| || || || ||||| | || | || | || Sbjct 141238 CATTGTTACCAAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAAT 141179 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 | | | ||||| ||| || | || ||||||||||||||||| | Sbjct 141178 TGCGCAGTCCATGTTTGGCAATTTTTTCCTTTAATACTTGCCAATCCCAAAGATCTGTGG 141119 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 || ||||| | ||||| || | || |||| ||| | ||| ||| | ||| | Sbjct 141118 GAGTTTTGTTCCACATCTCATACTGTAATATACCTTGACTAACAGGACTACCTTCATAAG 141059 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| ||| ||| ||| || || | ||| ||||| ||||| || |||| |||||| | Sbjct 141058 TTTCATATACACCATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAAA 140999 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTGC--TTCTGATGATTCAAAAGGATANNN 47686 | ||||||||||||| | || || || | || || | | |||| ||||| Sbjct 140998 TAGTTTCAAATATTTGTTGATTCAGTTTAATAGCACTTTCGTT--TTCATAAGGAATGCG 140941 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 ||||| || || || || || |||||||| ||||| |||||||| | | Sbjct 140940 CATCAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCAT 140881 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 ||| || || |||||||| | |||||| ||| | ||| ||||||||||| || Sbjct 140880 ATTTGATTTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTT 140821 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAAT-TTATTAAAATCAAACTTGTTAT--TTAT 47863 | ||| ||||| ||| |||||| | | |||| | || Sbjct 140820 CTGAGTGACAATTTTAGTCACTTC-CTTAAGCTTAATAAAATTGTATGTTTTATCATCAT 140762 Query 47864 A-ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 |||||| |||| | || || ||||| | ||| || || ||| |||| || | | Sbjct 140761 TCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATG 140702 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 | || | | ||||| | ||| | || | || || || || |||||||||| |||| Sbjct 140701 TGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGAT 140642 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 || | | ||||| || ||||| || |||||| | ||||| |||||||| | || | Sbjct 140641 TACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTG 140582 Query 48043 ATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTA---TTAT 48099 || || |||| |||||| | | ||| |||| | ||| | | | | || | Sbjct 140581 CCTCTATAATAGCTTTCCATAGTATTTGAGC-TTTA-ACTTGCTTGA-CATAACGTTTTT 140525 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCA 48158 | ||||| ||||| ||| | ||||||||| || || | ||| | | ||| ||| Sbjct 140524 CCTGTTCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCA-ACAGTCTGCTAGTCCA 140466 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 ||| | |||| ||| ||||| | ||| || |||| || | || | |||||||| Sbjct 140465 GGAGAATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAAT 140406 Query 48219 ATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277 | |||||| ||||| | ||| ||| || | || || | ||| | ||| || |||||| Sbjct 140405 AAATCTGGGATCCACAAAGC-ATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGCCATG 140347 Query 48278 ATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 |||| |||| | || | ||| || | |||||| |||||||| || ||||| || | || Sbjct 140346 ATTCTTTTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGC 140287 Query 48338 CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAAC 48397 | | |||||||||||||| || |||||||| | |||||||||||| ||||| ||||| Sbjct 140286 AAAGGCTCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAAC 140227 Query 48398 TCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACT 48457 | ||||| || |||| ||||||||| | ||||| ||||| | |||||| | || | Sbjct 140226 ACGCAACATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCTTT 140167 Query 48458 AGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 ||||| || | | | || || ||| |||||||| || || || || | ||| Sbjct 140166 TGCTCTAATGCAATGCACAT--GAACACCAATACCACCAGCTGACTTTGAAATCAATGCA 140109 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 || | || | || ||||| || || || || || |||||| |||| | |||||| Sbjct 140108 CATTGCTTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAA 140049 Query 48576 CAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATA 48635 || ||||| || || ||| | | | ||| | |||||| ||| || || Sbjct 140048 CAGGAAGACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTA 139989 Query 48636 AACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGT 48695 || |||| || ||||| || || ||||| | ||| ||| ||| ||||| |||| Sbjct 139988 AAATATTTTTCAGATAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTCACCATGT 139929 Query 48696 ATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 || || |||||||| | ||||||||||| || ||||| ||||||| Sbjct 139928 ATTCCAATAGATACTCTCATTAACATATGCTGTGGTCTCTCAACAA 139883 >seq142 Length=7807734 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||| | | |||| || || | ||| ||||||||| ||||| | |||||| || Sbjct 5994374 TGGATCTCTGATGTATGTGTCAATTAGTAATGAGTACATTTCAGAATGTACATTTTCCAT 5994315 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCT 19340 ||| || || || || || ||| |||| ||||| || | || || || | || || Sbjct 5994314 AGCAATTTGGAACCCATAGAAAAATCTGGCTTCAGTCACTTGGACCTCCTGTGAGAACCT 5994255 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| || | ||||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 5994254 TTCTACAAGATTTTCATTGACTATTCCATCTGATGCAGCGAAGAATGCCAAAACATGCTT 5994195 Query 19401 AATAAAATGTTTTTCA 19416 ||||||||| ||||| Sbjct 5994194 AATAAAATGCCTTTCA 5994179 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| || | |||||| ||||| | |||||||| |||||||| || | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || |||||||| || |||||||| || ||||| ||||| || || | Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | | ||| ||| | | || || | ||||| | || ||||| |||| Sbjct 5994892 CGACGATACGTTCACCAAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTCAG 5994833 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||||||| ||||| |||| ||||| || | || |||| Sbjct 5994832 CCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAATA 5994791 Score = 100 bits (110), Expect = 3e-16 Identities = 84/102 (82%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 || |||| || ||||| |||||||| ||||||||||| || || || ||||| || |||| Sbjct 5993899 TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAATGATGCTTCCGCTTTCTTGTACA 5993841 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAATC 19546 | |||||||||||| |||| || || || ||||| ||||||| Sbjct 5993840 TTTTCCATATATCAGGATACTGAATTGGGAATATTACAAATC 5993799 >seq2271 Length=4634553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693 ||||||||| | || |||||||| || ||||| |||||||||| | || | | Sbjct 3295179 ATGACTCCTGTACGTCCGATGTTGGCTGAGGCATGTAAATCTGTAGAAATGGCCATGAGG 3295120 Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753 || | |||||||||||| ||| | |||||||| |||||||| ||| | || ||||| || Sbjct 3295119 AAATGTCCAAATGGAATGTTTTCTGAAATAAAGTATGACGGTGAAAGAGTCCAGGTGCAT 3295060 Query 136754 AAGAATGG 136761 || || || Sbjct 3295059 AAAAAAGG 3295052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562054394894520