Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq142 114 2e-20 seq1833 105 1e-17 >seq142 Length=7807734 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 || |||||| ||||| || ||||| || ||||| || |||||||| ||||| ||||| Sbjct 5994344 TGAGTACATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGC 5994285 Query 48481 CTCAAACACCTGCACTTC-TGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 ||| ||| || || || |||| |||| || || | ||||| ||||||||||| |||| Sbjct 5994284 TTCAGTCACTTGGACCTCCTGTG-AGAACCTTTCTACAAGATTTTCATTGACTATTCCAT 5994226 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATG 48579 |||| ||||| ||||| || | ||||| |||| ||||| Sbjct 5994225 CTGATGCAGCGAAGAATGCCAAAACATGCTTAATAAAATG 5994186 Score = 93.3 bits (102), Expect = 8e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || |||||||||| || |||| || |||||||| || | || ||| ||| || ||| Sbjct 5994977 AGTCCAGGCATGAGTCCTCTCTTCTTCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAG 5994918 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 |||||||| || ||||| ||||| ||| || | || || || | || ||||| Sbjct 5994917 AAGATGCCTTCAACTGCAGCGAAGGCGACGATACGTTCACCAAATGTGGCTGTCTTGCTG 5994858 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 | |||||| || |||||||| |||||||| || | || |||| ||||| ||||| Sbjct 5994857 GCGATCCACTGTAGAGCCCAGTCAGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGC 5994799 >seq1833 Length=3996534 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 241471 CAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 |||| ||||||| ||| ||| || | ||| || ||||| |||||| | ||||||||| Sbjct 2063920 CAGTTCTGCGTTTTCACCCTTCAGGATCTTGACCTTCTCTTCCAGCTTGGAGATGCGTTC 2063979 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 ||| || ||||| |||||||| | ||| || | || |||| | ||||| |||||| Sbjct 2063980 CAGCTTTCGCCGCCGGCATTTAGAGGCGGCTACTCGATTCCTCTGCCTCTTTCGTTCCAG 2064039 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||||||| || || ||||||||||| || || Sbjct 2064040 CTTGATGCGCTCTTGTGTGTCCATGTCGATGGGCGA 2064075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931442639269120