Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2594 224 5e-54 >seq2594 Length=7326867 Score = 224 bits (248), Expect = 5e-54 Identities = 853/1313 (65%), Gaps = 67/1313 (5%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTT--GAAGTGAATGGTTCAAAACAT 25072 |||||||||||||| |||| |||| || ||| | | || ||||| || ||||| || Sbjct 141297 AAATTCTCCAGACAGTACTCGTCTT--TGGTAAATATTAGATGTGAAAGGCTCAAATGAT 141240 Query 25073 TCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAA 25132 ||||| || || | ||||||| ||| || || |||||||| ||||||| || ||| Sbjct 141239 TCATTGTTACCAAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAA 141180 Query 25133 TTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCT 25192 || | || |||| ||| |||| | || |||||| | |||||| || || || Sbjct 141179 TTGCGCAGTCCATGTTTGGCAATTTTTTCCTTTAATACTTGCCAATCCCAAAGAT---CT 141123 Query 25193 AACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTG-CTG-CAGGCGATT 25250 | | ||| || || ||| | ||||| | || ||| || |||| Sbjct 141122 GTGGGAGTTTTGTTC-CACATC--TCATACTGTAATATACC--TTGACTAACAGGACTAC 141068 Query 25251 GATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCT-CTAACGCA 25309 ||| ||||| |||| ||| | | || ||||| || | ||| |||| ||| Sbjct 141067 CTTCATAAGTTTCATATACACCATATTTTTCTGCCAATTCGCAAC-TGGCTTCTAAAGCA 141009 Query 25310 GCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTT----AGCTTTTTCTCCATC 25365 ||||||| ||| ||||||| || ||||| | | || ||| |||| || Sbjct 141008 CCATAATAAATAGTTTCAAATAT----TTGTTGATTCAGTTTAATAGCACTTTCGTTTTC 140953 Query 25366 GAAAGCAATTTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGG 25425 ||| ||| ||| || | || || || ||||| ||||| || || | |||| || Sbjct 140952 ATAAGGAATGCGCATCAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGG 140893 Query 25426 ACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCAC 25485 | |||| | |||| | ||| | ||||| |||||| || || ||| || | Sbjct 140892 TCTATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAAT 140833 Query 25486 ATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAA-CTCAATAAAGTCAAAAT 25544 |||| || |||| || ||| || || | || || || || |||||| | Sbjct 140832 TTTATTCAGGTTCTGAGTGACAATTTTAGTC-ACTTCCTTAAGCTTAATAAAATTG---- 140778 Query 25545 AAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTAC 25604 ||| |||| |||| || ||||| || ||| || || ||||| ||||| | Sbjct 140777 ------TAT-GTTT-TATCATCATTCACAAACATATTTAACGCAATGGATGCCAAATTGC 140726 Query 25605 AAACAGCTTGTTCTTTCCCGTCAGAA---TATTCATTGATCTCGATACATAAGTTGCTAG 25661 | || ||| ||| | | |||| || ||| || || |||| |||||||| Sbjct 140725 ACACTGCTGTTTCAT---CTGCAGATGTGTACTCAACAATTTCTGTACACAAGTTGCTGC 140669 Query 25662 ATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAAT-ATCTTTATATCCT 25720 | || ||| || |||| || |||||| | | |||| ||| ||| |||||| Sbjct 140668 ACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATT-ACAGGCATCCTTATATAGC 140610 Query 25721 AAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCT 25780 | |||||| || || ||||||| ||| | ||| ||| | ||| ||| | ||| Sbjct 140609 ATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCATAGTATTTGAGCT 140550 Query 25781 TTTACTTTCTTTACGAA--GTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATT 25838 || |||| ||| || | ||| || || | |||| || ||| | |||||| Sbjct 140549 TTAACTTGCTTGACATAACGTTTT--TCCTGTTCATATTTTTCATAGAGTGCCTCAAATT 140492 Query 25839 CTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGA 25898 | | | | || | ||| ||| || | |||||| || | ||| | Sbjct 140491 CCTCAC-------CCCA----ACAGTCTGC--TAGTCCAGGAGAATCATGAGGGCACATA 140445 Query 25899 ATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTG 25958 | | ||| || |||||| |||||| | ||||||||||||||| ||||||| | Sbjct 140444 AGACT--CCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCCACAAAG 140387 Query 25959 CATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGA 26018 |||| || | ||||| ||||| | ||| ||||| || ||||||||||| | ||| || | Sbjct 140386 CATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAA 140327 Query 26019 AATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTC 26078 | || || ||||||| ||||| || ||||| |||| |||||| ||| || ||| Sbjct 140326 ATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTAT 140267 Query 26079 CTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATC 26138 |||||||||||| || ||||| ||||| | ||| |||| |||||| ||||| | | Sbjct 140266 TTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAACAACAC 140207 Query 26139 CAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCAT 26198 || |||||| ||| ||||| | | ||| | || ||| | | |||||| || ||| Sbjct 140206 CATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAATGCACAT 140147 Query 26199 GAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT-CTGAAACTGTATCGAAA 26257 ||| ||| || |||||||| | |||||||| |||||| | || || || || | Sbjct 140146 GAACACCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAA-AGTGTCATAT 140088 Query 26258 ATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTG 26310 || || | ||||| ||| |||||||| | | | |||||| ||||| || || Sbjct 140087 ATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTG 140035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253016121168725