Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2594 197 2e-45 seq1684 84.2 3e-11 >seq2594 Length=7326867 Score = 197 bits (218), Expect = 2e-45 Identities = 904/1409 (64%), Gaps = 46/1409 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| | ||||| ||| | || | || || || || || ||||| |||||| ||| Sbjct 139894 CCACAGCATATGTTAATGAGAGTATCTATTGGAATACATGGTGAAGATATTGATGCTGCT 139953 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 75330 | | |||||| | | || || ||| || | ||||||| ||||| ||||| Sbjct 139954 ATCAACACATACAATTTATTATCTGAAAAATATTTT-ACCCACGCAAGTCCAACTCTCTT 140012 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||| || |||||||| ||| |||| || || ||| | || | || || || Sbjct 140013 TGCTGCTGCAACCCCAAGACCTCAGTTGTCTTCCTGTTTTCTTGTTGCAATGAAAGATGA 140072 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | || || |||| ||| | | | | ||||| || ||||||| ||||| Sbjct 140073 CAGCATTGAGGGGATATATGACACTTTAAAGCAATGTGCATTGATTTCAAAGTCAGCTGG 140132 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 |||||||| | || | ||| | ||||| || | |||| || ||||| Sbjct 140133 TGGTATTGGTGTTCATGTGCATTGCATTAGAGCAAAAGGCACCTATATTGCTGGAACAAA 140192 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| ||| ||||| || |||| ||| | || || | ||| ||| || | ||||| Sbjct 140193 TGGAGTTTCAAATGGTGTTGTTCCTATGTTGCGTGTTTACAACAACACTGCCAGATATGT 140252 Query 75571 AAATCAAGCGGGGCGT---CG-CAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 |||||| || | || | ||| | || | || |||||||| || || ||||||| Sbjct 140253 TGATCAAGGTGGAAATAAACGACCAGGAG-CCTTTGCTGTCTACTTAGAGCCTTGGCATG 140311 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 | ||||| | || || | || || | || || || | || || | || | | | Sbjct 140312 CAGATATATTCGAATTTTTGGATTTGAAAAAGAATCATGGCAAAGAGGAAG-TCAGAGCA 140370 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 |||| || || | | ||||||| ||||| | || ||||| || |||||| | | Sbjct 140371 AGAGAACTGTTCTATGCTTTGTGGATCCCAGATTTATTTATGAAACGCGTTGAGAAAAAT 140430 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAG 75805 | | ||| |||| | || || | | | || || || | ||| ||||||| Sbjct 140431 GAAGACTGGAGTCTTATGTGCCCTCATGATTCTCCTGGACTAGCAGACTGTTGGGGTGAG 140490 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGG---GTAGAGCCAATGCGACTGTA 75862 || ||||| || ||||| ||| |||||| |||| || | ||| || | | | Sbjct 140491 GAATTTGAGGCACTCTATGAAAAATATGAACAGGAAAAACGTTATGTCAA-GCAAGTTAA 140549 Query 75863 CCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 ||| | || | ||||| |||||| | | |||| || ||||| |||||||| Sbjct 140550 --AGCT-CAAATACTATGGAAAGCTATTATAGAGGCACAAGTTGAAACTGGCACACCATA 140606 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 |||||| || |||||||| ||||| | |||||||| || || |||||||| ||||| || Sbjct 140607 TATGCTATATAAGGATGCCTGTAATAGAAAGAGTAATCAGAAAAATTTGGGCACAATTAA 140666 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 | || || | || || |||||| | ||||||||| | ||||| || || || || Sbjct 140667 GTGCAGCAACTTGTGTACAGAAATTGTTGAGTACACATCTGCAGATGAAACAGCAGTGTG 140726 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAG---AGACTCGCACTTTTGA 76098 |||||||||||| || || | | || ||| ||||| | | || || |||| | Sbjct 140727 CAATTTGGCATCCATTGCGTTAAATATGTTTGTGAATGATGATAAAACATACAATTTT-A 140785 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || || ||| | ||| | || || ||||| || | || || || | | ||||| Sbjct 140786 TT-----AAGCTTAAGGAAGTGACTAAAATTGTCACTCAGAACCTGAATAAAATTATTGA 140840 Query 76159 CAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 || |||||||| || ||| || || || |||||| |||| |||||||||| Sbjct 140841 TGTCAACTTTTATCCAGTGCCAGA-AGCAAAGAAATCAAATATGAGACATAGACCTATTG 140899 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATT--TGATTC 76275 | | ||||| || ||| | || || |||| | || | | |||||| | || Sbjct 140900 GGATTGGTGTGCAGGGTTTAGCTGACACATTTGTATT-----GATGCGCATTCCTTATGA 140954 Query 76276 AGATGAA---GCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 | | ||| || | | ||||| | || |||||||| || ||| | | | | Sbjct 140955 AAACGAAAGTGCTATTAAACTGAATCAACAAATATTTGAAACTATTTATTATGGTGCTTT 141014 Query 76333 GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 || || ||||| |||||||| ||| | ||| ||||| || | ||| ||| ||| Sbjct 141015 AGAAGCCAGTTGCGAATTGGCAGAAAAATATGGTGTATATGAAACTTATGAAGGTAGTCC 141074 Query 76393 CGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAA---CCA-AGCTCAACT 76448 | ||||| | | |||| ||| |||||| | ||| ||| || || | Sbjct 141075 TGTTAGTCAAGGTATATTACAGTATGAGATGTGGAA---CAAAACTCCCACAGATC-TTT 141130 Query 76449 ACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508 || ||| | || | |||||| || | | || || || || ||| | | Sbjct 141131 GGGATTGGCAAGTATTAAAGGAAAAAATTGCCAAACATGGACTGCGCAATTCACTTCTAA 141190 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 | || || |||||||| || ||||| || ||||| | ||||| ||||||| ||||| | Sbjct 141191 TAGCCCCTATGCCAACTGCTTCCACTGCTCAAATACTTGGTAACAATGAATCATTTGAGC 141250 Query 76569 CATACACAACAAACATCTACCTGAGAAGA 76597 | | |||| | || || |||| ||| || Sbjct 141251 CTTTCACATCTAATATTTACCAAAGACGA 141279 >seq1684 Length=9537115 Score = 84.2 bits (92), Expect = 3e-11 Identities = 246/374 (66%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||| || || ||| || | ||||| ||| | ||||| || ||| Sbjct 8923539 CCTGGTACTGGTAAGACGCTTCTTGCCAAGGCAACAGCGGGGGAAGCCAATGTTCCTTTC 8923598 Query 175375 ATCCAGTGC-TCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || | || || | || | || | ||||||||||| ||||| ||| | || || Sbjct 8923599 ATA-ACTGTATCCGGTTCAGAATTCTTAGAGATGTTTGTCGGTGTTGGTCCTTCTAGAGT 8923657 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || || | ||| || ||||| || || || || ||| | || |||||||| || Sbjct 8923658 ACGTGACATGTTTTCCATGGCCCGTAAACATGCTCCCTGCATTCTGTTTATTGATGAAAT 8923717 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTAT-GCCAGCAAATGACGAGAGAGAAC 175552 |||||| || || | | | | ||| | || || | | | || | | | ||| ||| Sbjct 8923718 TGATGCTGTAGGGAGGAAGAGGGGCGGTCGTAGTTTCGGCGGCCATTCA-GAGCAGGAAA 8923776 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 | ||| | |||||||| || |||||||| |||||| ||| | || |||||| Sbjct 8923777 ACACATTAAATCAACTTCTAGTTGAGATGGACGGCTTTAACACTACTACAAATGTTGTGG 8923836 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTT 175672 | |||| ||||| || | || ||||| | ||| | || | || | ||||| | | Sbjct 8923837 TGCTTGCTGCCACAAACAGAGTTGATATTTTAGATAAGGCTTTACTCAGACCGGGCAGAT 8923896 Query 175673 TTGATCGCAAGATC 175686 |||| || ||||| Sbjct 8923897 TTGACCGACAGATC 8923910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596511859519840