Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2594 219 1e-51 seq1684 136 1e-26 >seq2594 Length=7326867 Score = 219 bits (242), Expect = 1e-51 Identities = 692/1058 (65%), Gaps = 21/1058 (2%) Strand=Plus/Minus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTG-TAATTGCTCC 155457 ||||||||| ||||||||||| || ||||| || | || | ||| || || ||| | Sbjct 140931 AAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATTTGAT-- 140874 Query 155458 TGCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTA 155513 | ||| ||||| | ||| ||||| || ||||||||||| ||||| | || || Sbjct 140873 TTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTG 140814 Query 155514 ACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACA 155573 || | | || || || || | || | | | | |||||||||| ||||| ||| Sbjct 140813 ACAATT---TTAGTCACTTCCTTAAGCTTAATAAAATTGTATGTTTTATCATCATTCACA 140757 Query 155574 AACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTA 155632 |||||| | |||| || |||| ||| || || || || || | || | | |||| Sbjct 140756 AACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATG-TGTA 140698 Query 155633 TTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGA 155692 || ||||| || |||| ||| | ||| || ||||| ||||| ||||| ||| Sbjct 140697 CTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACT 140638 Query 155693 TTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTC 155752 || || ||||| |||||||| ||||| || ||||| || || || || | ||||| || Sbjct 140637 CTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTC 140578 Query 155753 CAGAAT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 | ||| |||| ||| || | || |||| ||||||| || | |||| Sbjct 140577 TATAATAGCTTT--CCATAGTATTTGAGCTTTAACTTGCTTGACATAACGTTTTTCCTGT 140520 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870 |||||||| ||| || | | |||||||| |||| || |||||||| | Sbjct 140519 TCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAGTCTGCTAGTCCAGGAGAA 140460 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCA 155930 | || ||||| | || ||| || ||| || || | |||||||| ||| Sbjct 140459 TCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCT 140400 Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT-CCTCATCGCCGTGATTCTT 155989 ||| | ||||||||| || || ||||| | ||||| |||| | ||| |||||||| Sbjct 140399 GGGATCCACAAAGCATAGAACAGTTCTCTTGC-TCTGACTTCCTCTTTGCCATGATTCTT 140341 Query 155990 CCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-C 156048 | || || ||||| ||||| | ||| ||||| | || | |||||| | Sbjct 140340 TTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGC 140281 Query 156049 TACCATTCCTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 | | || | | | ||||| ||||| ||||| | ||||| || ||| | |||| | Sbjct 140280 TCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAA 140221 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 |||||||| || |||||| ||| ||||| ||||| ||||| | || || | Sbjct 140220 CATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCT 140161 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 || ||| | ||| | ||||||||||| | | || ||||| || |||| ||| Sbjct 140160 AATGCAATGCACATGAACACCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTT 140101 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACT 156286 || ||| | | || || ||||| ||||||| ||||| | ||| | || ||| Sbjct 140100 TAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGA 140041 Query 156287 TAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTT 156346 || ||||||| ||| ||| |||| || || || || |||| || ||||||| || Sbjct 140040 CAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTT 139981 Query 156347 ATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGAT 156406 | ||| | ||| |||||| | || |||| || || || || | || Sbjct 139980 TTCAGATAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAAT 139921 Query 156407 AGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 ||| || ||||| |||||||||| || | ||| |||| Sbjct 139920 AGATACTCTCATTAACATATGCTGTGGTCTCTCAACAA 139883 >seq1684 Length=9537115 Score = 136 bits (150), Expect = 1e-26 Identities = 229/329 (70%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 289016 CGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||| ||| || | || |||||||||||||| ||||| || | | || |||| || || Sbjct 8923743 CGCCCCTCTTCCTCCCTACAGCATCAATTTCATCAATAAACAGAATGCAGGGAGCATGTT 8923684 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 | || || | ||| | || | ||| | || | |||| ||| ||| |||| |||| Sbjct 8923683 TACGGGCCATGGAAAACATGTCACGTACTCTAGAAGGACCAACACCGACAAACATCTCTA 8923624 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 ||||| ||| ||||||| ||||| | ||||| ||||| || ||| |||| | | Sbjct 8923623 AGAATTCTGAACCGGATACAGTTATGAAAGGAACATTGGCTTCCCCCGCTGTTGCCTTGG 8923564 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA-TAGAACTCCCTTTGGTACTTTT 289254 | ||||| |||||||| || ||||| ||| ||| ||| | |||| || || | ||| Sbjct 8923563 CAAGAAGCGTCTTACCAGTACCAGGGGGT-CCTGTAAGCAATGCTCCTTTAGGGATTTTA 8923505 Query 289255 GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCA 289314 |||||| | |||| | || ||| |||| || || | ||||| ||| || ||| Sbjct 8923504 GCCCCAAGATCGATATACTGCTGAGGATTCTTCAAGAAATTTACAAACTCCATAATTTCG 8923445 Query 289315 TATTTTGCCTCATCACATCCTGCTACATC 289343 ||| ||||| ||||| || |||||||| Sbjct 8923444 ATTTTAGCCTCTTCACAGCCAGCTACATC 8923416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471671585115391