Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3932 147 3e-29 seq1986 147 3e-29 seq142 100 3e-15 >seq3932 Length=1625400 Score = 147 bits (162), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| | ||||| |||||| | ||| || | || Sbjct 1618790 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCTCACGGAGGTCTGCACCTCCCGGGACGTGA 1618849 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| |||| |||| ||||||| ||||||| |||| | Sbjct 1618850 TTGTGGAACGCTTGTTGTAGTGGGCCAAACGGGACGCCTCGGCAGCGATGCGTTCGAAGA 1618909 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || ||||||||||||| ||||||| ||| |||| || || |||||| | Sbjct 1618910 TGTCATTCACGAACGAGTTCATGATAGACATCGCCTTACTGGATATACCAGTGTCGGGAT 1618969 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 1618970 GAACCTGCTTCAGCACCTTGTAGATG 1618995 >seq1986 Length=5217794 Score = 147 bits (162), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| | ||||| |||||| | ||| || | || Sbjct 20776 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCTCACGGAGGTCTGCACCTCCCGGGACGTGA 20717 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| |||| |||| ||||||| ||||||| |||| | Sbjct 20716 TTGTGGAACGCTTGTTGTAGTGGGCCAAACGGGACGCCTCGGCAGCGATGCGTTCGAAGA 20657 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || ||||||||||||| ||||||| ||| |||| || || |||||| | Sbjct 20656 TGTCATTCACGAACGAGTTCATGATAGACATCGCCTTACTGGATATACCAGTGTCGGGAT 20597 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 20596 GAACCTGCTTCAGCACCTTGTAGATG 20571 >seq142 Length=7807734 Score = 100 bits (110), Expect = 3e-15 Identities = 145/200 (73%), Gaps = 5/200 (3%) Strand=Plus/Minus Query 869200 TTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGC-GC 869258 ||| ||||| || | || || |||||||| || | |||||| ||||| ||||||| || Sbjct 5994993 TTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCTTCAGCCAGAAGATGGAAGC 5994934 Query 869259 AGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAA 869318 | ||||||||||| || |||||||| || || || || ||| ||| || || || ||| Sbjct 5994933 A-AAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGGCGACGATACGTTCACCAA 5994875 Query 869319 AGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCG 869378 | ||| | | | | | || |||||||| | |||||||| ||||| || |||| Sbjct 5994874 A--TGTGGCTGTCTTGC-TGGCGATCCACTGTAGAGCCCAGTCAGCCTTCTTTTTCACAC 5994818 Query 869379 ACGGCACCGTGTCGATGGCG 869398 | |||| || || |||||| Sbjct 5994817 AGGGCAGAGTCTCAATGGCG 5994798 Score = 93.3 bits (102), Expect = 5e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| || ||||||||||||||||| |||||||| || ||||||||| | Sbjct 5995465 AGCAGTCGGTCAGCCACAAACTCGATGTACTGCGACATGAGGTCGCAGTTCATGCCCAGC 5995406 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||| |||| || || ||| ||||| | ||||||| | ||||| || |||| Sbjct 5995405 AGCCTCACGGGCAACGCGTCTGTCAGGAACTCCTGCTCGATCACCACGGCGTCCTTGATG 5995346 Query 868931 ATCT 868934 |||| Sbjct 5995345 ATCT 5995342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106503773159531