Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq557 235 4e-57 seq381 138 9e-28 seq5264 98.7 8e-16 seq6227 82.4 6e-11 >seq557 Length=1183051 Score = 235 bits (260), Expect = 4e-57 Identities = 649/984 (66%), Gaps = 17/984 (2%) Strand=Plus/Minus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 |||||||| || ||||||||||| ||| | || || ||||||||| ||||| | Sbjct 1026967 GCGTATTTCGTCGAATGGGGCGTCTATCCTAGAAAATTCCCGGTAGACCGCGTGCCTATT 1026908 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 ||||| | | ||| || ||||||| ||||| || |||||||| ||||| || ||||| Sbjct 1026907 CCCAATTTAACCCATTTGCTGTACGGCTTCATCCCAATTTGCGGAGGCGATGGCATCAAC 1026848 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | || || |||||||| | || |||| || || |||| ||||| Sbjct 1026847 GACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTTTGCAGCGATCGTGCAGCGGCCGA 1026788 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 || ||||| || | || || ||||| ||||| || | || ||||| || ||||| Sbjct 1026787 GAGGACTTCAAGGTGTCCATCCATGATCCATGGGCAGCTCTCCAGAAACCACAGAAGGGA 1026728 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 ||||| | ||||||||||| ||||| || ||||| || ||| | ||| | || | Sbjct 1026727 TTGTCTTCATGGAACGAGCCATACAAGGGCAACTTTGGCCAGTTGATGATGTTGAAACAA 1026668 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432 || || || |||| ||||| |||| || ||||| || ||||| ||| | || || ||| Sbjct 1026667 GCTAAGCCTGACCTGAAAATCTTGCCATCTATCGGTGGATGGACTTTGGCTGATCCATTC 1026608 Query 29433 TATTTCATGCAC-GACGCGGAAA---AACGGCG-TGTGTTTGTGGACTCGGTCAGAGAAT 29487 | ||| | ||| ||| ||| || | | | |||||| | || || | ||| | Sbjct 1026607 TTCTTC-TTCACTGAC----AAATCTAAGAGAGATCGGTTTGTAGCTTCAGTTAAAGATT 1026553 Query 29488 TTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCA 29547 ||||| | ||||| || ||||| || || || || || ||||| || || || || | Sbjct 1026552 TTCTGGAAACCTGGAAATTCTTTGATGGTGTTGATATCGATTGGGAATTCCCTGGCGGTA 1026493 Query 29548 AAGGCGCCAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29607 ||||||| || || | || |||| | |||| || ||| | | | Sbjct 1026492 AAGGCGCTAATCCCAACCTCGGCA---GTCCCAAAGACGGTGATGTGTACGTAAGTCTGA 1026436 Query 29608 TAAAGGAATTGCGCGCAATGATGGACGAGTTA-CAATTGCAAACGGGCAAAACGTACGAG 29666 | |||||| | || | ||| | |||||||| || || |||| || || | |||||| Sbjct 1026435 TGAAGGAACTCCGTGAGATGCTCAACGAGTTATCAGCTG-AAACTGGAAAGAAATACGAG 1026377 Query 29667 TTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCG 29726 |||| ||| ||||| | || || || || || || || ||| ||| || Sbjct 1026376 CTGACTTCCGCTATCAGCGCAGGTTGGGATAAAATCCAAGTGGTGAACTACAACGAAGCT 1026317 Query 29727 CAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAAC 29786 || || | | || | |||||| ||||||||||||| || ||||| || ||||||||| Sbjct 1026316 CAGAAATACATGGACCATATATTCTTCATGAGCTACGACTTCAAAGGAGCCTGGTCAAAC 1026257 Query 29787 ACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGA-ACTGTA 29845 | ||||||| | || || || | |||||||| |||| ||||| || ||| || Sbjct 1026256 GACACTTTGGGCCATCAGACGTCTTTGTACGCGCCTTCATGGAGGCCAAAGGAGACT-TA 1026198 Query 29846 CAACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTAT 29905 || || || || ||||| || || || || ||| || || ||| | Sbjct 1026197 CACGACAGATTTCGGTGTTAAATTCCTGTTAGCTCAAGGTGTGAGTTCGAAGAAGATTGT 1026138 Query 29906 TGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACAA 29965 ||| || || || ||||| ||| | || ||||| || || | || ||||| || Sbjct 1026137 TGTAGGTGTAGCTATGTATGGCAGAGGATGGACCGGTGTCCAGAACTACACGGGTGATAA 1026078 Query 29966 CTATTTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTGTCGA 30025 ||| || || | || | ||||| | || | ||| |||||||||| || || Sbjct 1026077 TCCTTTCACTGGGATCGCCACAGGGCCTTGCAAGGGTTCGTGGCAAGACGGCGTAGTTGA 1026018 Query 30026 CTATCGCCAAATTGAAAACGAAAT 30049 || | | |||| ||||||||| Sbjct 1026017 TTACAGGGATATTGCAAACGAAAT 1025994 >seq381 Length=8194978 Score = 138 bits (152), Expect = 9e-28 Identities = 329/489 (67%), Gaps = 29/489 (6%) Strand=Plus/Minus Query 103595 GACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAGGGCGACGAC 103654 ||||||||| | || || ||||||||||||||||||||||| ||| |||||||||||| Sbjct 1460419 GACGAAGTGAGATGTGCTTTTTGCAAAGTGGAGATTATGCGGTGGATGGAGGGCGACGAT 1460360 Query 103655 CCGGCTCGCGATCATCAGAGGTGGGCGCCGCAGTGTCC---GTTCCTGaaaaaaaCGGCT 103711 || || ||||||||| | |||||||| |||||||| ||| | ||| | | | Sbjct 1460359 CCAGCCAAAGATCATCAGCGATGGGCGCCACAGTGTCCTCTGTTACGTAAACAGAATAGT 1460300 Query 103712 GCTGGCGCGCTGCCCGCCGGCCT-----TGCGATGGACGGGCAGGACGAGTGCGGCGTGA 103766 ||||| | |||| || || | | | | |||| | || || || || | Sbjct 1460299 GCTGGTAACGTTCCCG--GGTCTACACCTTCCACGAACGGACGAGATGAATGTGG--TCC 1460244 Query 103767 GCGCGCTGCCGTCCACCAACGCCTGCGTGCGCATGCCCGGCCCCGCGCACCCTCGGTTCG 103826 ||| | ||| | | || || | | | || | || |||| | || | || Sbjct 1460243 ACGCA-TACCG-CTTGCGACCCCCGGGAGACCAAGTCCCGCCC-----ATCCGGAATACG 1460191 Query 103827 C---CTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCGGAGTCTGAAACAGA 103883 | | || |||| ||||| | || ||||| || ||||| || ||| || |||| Sbjct 1460190 CAAACATCGCGGCC---AGGTTGCGCACCTTTAAAGACTGGCCTCGTAGTATGCCCCAGA 1460134 Query 103884 AACCGGAGAAGATG--GCCGAAGCCGGATTCTACTACACCGGCCACAGCGACAACACGAA 103941 |||| ||||||| ||||| ||||| || || ||||||||||| ||||||| || || Sbjct 1460133 AACC--AGAAGATTTAGCCGAGGCCGGCTTTTATTACACCGGCCAAGGCGACAAGACCAA 1460076 Query 103942 ATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGAGCCGTGGCAACA 104001 || | ||||| ||||| || || || || ||||| | ||||| | |||||| | || Sbjct 1460075 GTGTTATTACTGTGACGGAGGACTCAAAGACTGGGAAAAGGATGACGTACCGTGGGAGCA 1460016 Query 104002 ACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGGCCACGATTATGT 104061 || || | || ||| |||||| ||||| || || || || | ||||||||| Sbjct 1460015 GCATGCCCGTTGGTTTGACCGTTGTTACTACGTATACCTAGTAAAAGGACGCGATTATGT 1459956 Query 104062 ACAAAAGGT 104070 ||||||| Sbjct 1459955 GAAAAAGGT 1459947 >seq5264 Length=5978571 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || || || |||||||| || || | || |||| | Sbjct 3785959 ATGCAAATTTTCGTCAAGACATTGACCGGCAAAACTATCACATTAGAGGTGGAGCCCTCG 3786018 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || || ||| || ||||||||| | ||| || ||| Sbjct 3786019 GATACTATTGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 3786078 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||||| || || | || ||||||||||| || |||||| ||| | | ||||| Sbjct 3786079 CAGAGGCTAATATTCGCAGGTAAACAGCTAGAAGATGGACGC----ACACTATCTGACTA 3786134 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||||| || || ||||| | || || ||||| | || |||| Sbjct 3786135 CAACATTCAAAAGGAATCCACTTTGCATTTAGTTTTACGATTGAGGGGAGGAA 3786187 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| |||||||| || || || || || ||||||||||| | ||| || || Sbjct 3328136 AAAATGCAGATTTTTGTTAAGACATTGACGGGTAAAACCATTACTTTGGAAGTAGAACCT 3328195 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| | | | |||||| || || || ||||||||| | ||| ||| Sbjct 3328196 TCCGATACCATTGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGAT 3328255 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||| || || ||| |||| |||| ||| | | ||||| Sbjct 3328256 CAGCAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAAGACGGTCGCACACTTTCTGACTAT 3328315 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || ||||||||||| || || | ||| |||| ||| Sbjct 3328316 AATATTCAAAAGGAATCGACTCTACACTTGGTATTG 3328351 >seq6227 Length=4744074 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94241 TGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCCAGTGGGGC 94300 || |||| ||| | || ||||| ||||| ||| ||||| ||||||||||||||| || Sbjct 4518956 TGCCCCACGCGGTAGATGCGGTCCTGCGCTTGCTCCTCGAGCTGCGGGTTCCAGTGCGGG 4519015 Query 94301 TCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 ||||||| | | ||| || ||||| ||||| | |||||||||||| Sbjct 4519016 TCCAGCAGCAGCAGGTGGCTGGCGCCGCACAGGTTCAGCCCCACGCCGCC 4519065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398839158868927