Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5264 89.7 9e-13 >seq5264 Length=5978571 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| ||||| ||||||||||| || ||||| | | |||||||| Sbjct 3786386 AGAGTAGATTCTTTCTGAATATTATAATCGGAAAGAGTGCGTCCATCTTCTAATTGTTTC 3786327 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || ||||| || ||| | ||| | || | |||||||||||||| || ||| Sbjct 3786326 CCAGCAAAAATGAGTCTCTGCTGATCAGGAGGGATACCCTCCTTATCTTGAATTTTGGCT 3786267 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 3786266 TTAACATTTTCAATAGTAT 3786248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903323761088480