Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2594 257 4e-63 seq4742 89.7 1e-12 >seq2594 Length=7326867 Score = 257 bits (284), Expect = 4e-63 Identities = 457/655 (70%), Gaps = 19/655 (3%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 || ||| |||| || |||||| | | ||| || ||||| ||||| || || ||||| Sbjct 140035 CAGTTGTCTTCCTGTTTTCTTGTTGCAATGAAAGATGACAGCATTGAGGGGATATATGAC 140094 Query 110571 GCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629 || |||||| || ||| | ||||| || |||| || |||||| |||| || || Sbjct 140095 ACT-TTAAAGCAATGTGCATTGATTTCAAAGTCAGCTGGTGGTATTGGTGTTCATGTGCA 140153 Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689 | ||| | ||||||| | |||| || | | || || | ||||| ||| |||| Sbjct 140154 TTGCATTAGAGCAAAAGGCACCTATATTGCTGGAACAAATGGAGTTTCAAATGGTGTTGT 140213 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---G 110746 ||| ||||| | || | |||| ||||||| | |||||| |||||||||| || | | Sbjct 140214 TCCTATGTTGCGTGTTTACAACAACACTGCCAGATATGTTGATCAAGGTGGAAATAAACG 140273 Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 | || | |||||| |||| | || ||||||||| |||||||||| ||||| || || Sbjct 140274 ACCAGGAGCCTTTGCTGTCTACTTAGAGCCTTGGCATGCAGATATATTCGAATTTTTGGA 140333 Query 110807 ACTTCGTAAAA--ATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || | |||| |||| || || ||| |||||| | || | || ||||| || Sbjct 140334 --TTTGAAAAAGAATCATGGCAAAGAGGAAGTCAGAGCAAGAGAACTGTTCTATGCTTTG 140391 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| |||||||||| |||||||| ||| | |||||| ||| ||||||||| Sbjct 140392 TGGATCCCAGATTTATTTATGAAACGCGTTGAGAAAAATGAAGACTGGAGTCTTATGTGC 140451 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 |||||| ||||||||| ||| | || ||| | || | || ||||| | || || || Sbjct 140452 CCTCATGATTCTCCTGGACTAGCAGACTGT-TGGGGTGAGGAATTTGAGGCACTCTATGA 140510 Query 110984 AAAATATGAAAAAGAAGGCAAGTT-TCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCA 111042 |||||||||| | ||| | ||| | ||| ||| || ||||||| ||| ||| | Sbjct 140511 AAAATATGAACAGGAA-AAACGTTATGTCAAGCAAGTTAAAGCTCAAATACTATGG---A 140566 Query 111043 AA---ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATA 111099 || || | || |||||||||||||||| || || ||||| | ||||| ||| Sbjct 140567 AAGCTATTATAGAGGCACAAGTTGAAACTGGCACACCATATATGCTATATAAGGATGCCT 140626 Query 111100 TTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 |||| | || |||||| | ||||| || |||||||||| || || ||||| Sbjct 140627 GTAATAGAAAGAGTAATCAGAAAAATTTGGGCACAATTAAGTGCAGCAACTTGTG 140681 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 ||||||| ||| || | || | ||||| |||||||||||||| | |||||| Sbjct 140798 AAGTGACTAAAATTGTCACTCAGAACCTGAATAAAATTATTGATGTCAACTTTTATCCAG 140857 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 | | | ||||||| | || |||| | |||||||| ||||| ||||| || || || | Sbjct 140858 TGCCAGAAGCAAAGAAATCAAATATGAGACATAGACCTATTGGGATTGGTGTGCAGGGTT 140917 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAA 112755 ||||||| |||| | ||||||| ||||||| ||| || |||||| | | Sbjct 140918 TAGCTGACACATTTGTATTGATGCGCATTCCTTATGAAAACGAAAGTGCTATTAAACTGA 140977 Query 112756 ATGAAAAGATTTTCGAAACAATCTATTTCGCTGCT 112790 || || | || || ||||| || |||| | |||| Sbjct 140978 ATCAACAAATATTTGAAACTATTTATTATGGTGCT 141012 >seq4742 Length=3164583 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| ||| || ||||| ||| | ||||| |||| || | ||||| |||||| | Sbjct 2177510 CATCTGAGGGATGATGATCTGGTGATTTTCAACCGGCAGCCGACTCTGCACAAAATGAGT 2177569 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT-GC 305427 ||||||| ||| | || ||||| | | | | ||||| ||| | || | ||| || Sbjct 2177570 ATGATGGGTCACAGGGTAAAAGTGCTGCCATGGTCAACATTCCGAATGAACCTCAGTTGC 2177629 Query 305428 TTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | |||| ||||| || || ||||||||||||||||||||| | ||||| || ||||| Sbjct 2177630 ACCT-CGCCATATAACGCCGACTTTGATGGAGATGAAATGAATTTACATGTCCCACAATC 2177688 Query 305488 AAAGGTTACAA 305498 || || |||| Sbjct 2177689 AATGGAAACAA 2177699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186695059640023