Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq381 107 2e-18 seq5264 104 2e-17 >seq381 Length=8194978 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 || ||||| | ||| || || |||||||| | || ||||| ||||| ||||||||| Sbjct 1460158 GACTGGCCTCGTAGTATGCCCCAGAAACCAGAAGATTTAGCCGAGGCCGGCTTTTATTAC 1460099 Query 99971 ACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAA 100030 |||||| |||| ||||| || |||| | | || ||||| || ||||||||||||||| Sbjct 1460098 ACCGGCCAAGGCGACAAGACCAAGTGTTATTACTGTGACGGAGGACTCAAAGACTGGGAA 1460039 Query 100031 AGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTG 100077 | |||| |||||| | | || || ||||||||||| || || Sbjct 1460038 AAGGATGACGTACCGTGGGAGCAGCATGCCCGTTGGTTTGACCGTTG 1459992 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 ||||| ||||| ||||||||| ||||||||| | || || ||||||||||| || Sbjct 1460446 AACGGTTTTTACTATTTGGGGAAAAATGACGAAGTGAGATGTGCTTTTTGCAAAGTGGAG 1460387 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 || ||||| ||| ||||||||||||| || || ||||||| | ||||||||||| || Sbjct 1460386 ATTATGCGGTGGATGGAGGGCGACGATCCAGCCAAAGATCATCAGCGATGGGCGCCACAG 1460327 Query 99758 TGCCC 99762 || || Sbjct 1460326 TGTCC 1460322 >seq5264 Length=5978571 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||| ||||||||||| |||||||| || || |||||||| ||||| |||||| Sbjct 3328136 AAAATGCAGATTTTTGTTAAGACATTGACGGGTAAAACCATTACTTTGGAAGTAGAACCT 3328195 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 |||| | ||| | || ||| ||||| |||||||||||| | ||| |||| Sbjct 3328196 TCCGATACCATTGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGAT 3328255 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA--TTCTAAAACTATGGGCGATT 106434 || || | || || | ||| || || || || ||||| || | ||| | || | Sbjct 3328256 CAGCAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAAGACGGTCGCACACTTT--CTGACT 3328313 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 | || || ||||| ||||| || ||||| || |||||| Sbjct 3328314 ATAATATTCAAAAGGAATCGACTCTACACTTGGTATTG 3328351 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||||||||| || ||||||| || || ||||| | ||| || || Sbjct 3786186 AATGCAAATTTTTGTTAAGACTCTGACTGGAAAAACTATTACTTTAGAAGTGGAGCCTTC 3786245 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || ||| |||||| || || || || | || |||||| Sbjct 3786246 AGATACTATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAGGGTATCCCTCCTGATCA 3786305 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || || || |||| ||| || ||||||||||||||| ||| | |||||| || Sbjct 3786306 GCAGAGACTCATTTTTGCTGGGAAACAATTAGAAGATGGACGCACTCTTTCCGATTATAA 3786365 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| || || |||||||| | | || ||||| Sbjct 3786366 TATTCAGAAAGAATCTACTCTTCACCTAGTATTGCGTCTCCGTGGAGG 3786413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || |||||||| ||||| || || || | || || ||| Sbjct 3785959 ATGCAAATTTTCGTCAAGACATTGACCGGCAAAACTATCACATTAGAGGTGGAGCCCTCG 3786018 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | ||||| |||||| |||||||||||| | ||| ||| || Sbjct 3786019 GATACTATTGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 3786078 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || ||||| || | || || ||||| |||||||| | | ||||| || |||| Sbjct 3786079 CAGAGGCTAATATTCGCAGGTAAACAGCTAGAAGATGGACGCACACTAT--CTGACTACA 3786136 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||| ||||| ||||| || | |||||||| || | || | |||||| Sbjct 3786137 ACATTCAAAAGGAATCCACTTTGCATTTAGTTTTACGATTGAGGGGAGGA 3786186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||||||||| ||||||| || |||||||| |||| ||||| Sbjct 3329963 ATGCAGATATTTGTTAAAACCCTGACTGGTAAAACCATTACTTTGGAGGTCGAACCATCT 3330022 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| ||||||| ||||| || ||| | || |||||| Sbjct 3330023 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGACAAGGAGGGCATCCCTCCAGATCAA 3330082 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||||| ||| || ||||| | |||||| ||| | || |||||| Sbjct 3330083 CAGAGACTTATTTTTGCTGGTAAACAGCTGGAAGATGGACGTACTCTTTCAGACTACAAC 3330142 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || ||||||||||| || | ||||| ||| Sbjct 3330143 ATCCAAAAAGAATCCACCTTGCATTTGGTA 3330172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||||||||| |||||||| || || |||||| | ||| ||| || Sbjct 3783451 ATGCAAATCTTTGTTAAAACCTTGACTGGAAAAACAATTACCCTTGAAGTAGAGCCATCA 3783510 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | ||||| |||||| ||||| || ||| | || || || Sbjct 3783511 GACACTATCGAAAATGTGAAGGCTAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAG 3783570 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || | || || | ||| || || || || |||||| | | ||||| |||||||| Sbjct 3783571 CAGCGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGACGCACACTAT--CCGATTACA 3783628 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTA 106469 | || || |||||||||||||| || || ||| Sbjct 3783629 ATATTCAGAAAGAATCTACACTTCACTTGGTA 3783660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || || |||||||||||||| || || || | ||| || || Sbjct 3783679 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACTATAACACTAGAAGTTGAGCCATCA 3783738 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || || ||||| |||||||||||| | || || || Sbjct 3783739 GATACTATCGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATCCCACCCGACCAG 3783798 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || | ||||||| ||| ||||| || ||||||||| | || ||| | ||||||| Sbjct 3783799 CAGCGTCTTATTTTTGCTGGCAAGCAGTTAGAAGATGGACGAACACTTT--CTGATTACA 3783856 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 | || || || ||||||||||| || || ||| || | | ||||| || Sbjct 3783857 ATATTCAGAAGGAATCTACACTTCACTTGGTACTGCGTCTCCGAGGTGG 3783905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402291633035744