Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3932 127 3e-23 seq1986 127 3e-23 seq142 100 4e-15 >seq3932 Length=1625400 Score = 127 bits (140), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || ||| || | | || |||| ||| | Sbjct 1618994 ATCTACAAGGTGCTGAAGCAGGTTCATCCCGACACTGGT-----ATA-TCCAGTAAGGCG 1618941 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || || ||||| |||| ||||||| ||||||| Sbjct 1618940 ATGTCTATCATGAACTCGTTCGTGAATGACATCTTCGAACGCATCGCTGCCGAGGCGTCC 1618881 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || ||||||||| ||| ||| | || ||| | |||||| ||||| Sbjct 1618880 CGTTTGGCCCACTACAACAAGCGTTCCACAATCACGTCCCGGGAGGTGCAGACCTCCGTG 1618821 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||| | ||| |||||| ||||||| |||||||||| ||||| || Sbjct 1618820 AGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCAGTGAGGGAAC 1618771 >seq1986 Length=5217794 Score = 127 bits (140), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || ||| || | | || |||| ||| | Sbjct 20572 ATCTACAAGGTGCTGAAGCAGGTTCATCCCGACACTGGT-----ATA-TCCAGTAAGGCG 20625 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || || ||||| |||| ||||||| ||||||| Sbjct 20626 ATGTCTATCATGAACTCGTTCGTGAATGACATCTTCGAACGCATCGCTGCCGAGGCGTCC 20685 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || ||||||||| ||| ||| | || ||| | |||||| ||||| Sbjct 20686 CGTTTGGCCCACTACAACAAGCGTTCCACAATCACGTCCCGGGAGGTGCAGACCTCCGTG 20745 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||| | ||| |||||| ||||||| |||||||||| ||||| || Sbjct 20746 AGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCAGTGAGGGAAC 20795 >seq142 Length=7807734 Score = 100 bits (110), Expect = 4e-15 Identities = 150/205 (73%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 |||||| || || |||| | |||| || ||||| |||||||| | |||||||| Sbjct 5994798 CGCCATTGAGACTCTGCCCTGTGTGAAAAAGAAGGCTGACTGGGCTCTACAGTGGATCGC 5994857 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 || | | | | | ||| |||| || || |||||| ||| || || || || |||||| Sbjct 5994858 CA-GCAAGACAGCCACA-TTTGGTGAACGTATCGTCGCCTTCGCTGCAGTTGAAGGCATC 5994915 Query 1456214 TTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || || ||||||||||| ||| ||||||| ||||| |||||| | || |||||||| || Sbjct 5994916 TTCTTTTCGGGCAGTTT-TGCTTCCATCTTCTGGCTGAAGAAGAGAGGACTCATGCCTGG 5994974 Query 1456273 TCTTCTGCTTTAGCAACGAATTTAT 1456297 ||| || ||||| ||| |||| Sbjct 5994975 ACTT-ACATTCAGCAATGAACTTAT 5994998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177064373418366