Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2594 619 2e-172 seq142 107 3e-18 >seq2594 Length=7326867 Score = 619 bits (686), Expect = 2e-172 Identities = 1219/1783 (68%), Gaps = 40/1783 (2%) Strand=Plus/Minus Query 68364 CTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACC 68423 |||||| | |||||||| || | || || ||||| ||||||| ||| ||||| || Sbjct 141657 CTTATCTACAGTAAACTGGATAGCATTGGCAGCAGGTTTAGTACGTAAATAATACATTCC 141598 Query 68424 GGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGG 68483 || |||| ||| | ||||| | || ||||| ||| || | |||| ||| | || Sbjct 141597 AGTCTTCAAACCCATTTTCCATGCATAAAAATGTATAGACGTCAATTTGCCGTAATTAGG 141538 Query 68484 ATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGC 68543 | || | ||| ||||| | || || || ||||| || || |||||||||||||| || Sbjct 141537 GGCAGCCACATGTATATTGAATGACTGGCTCTGATCTATAAATGCTCCTCTATCTGCGGC 141478 Query 68544 CATTTTTATAATACTCTTTTGA--GGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATA 68601 ||||| ||| | | |||||| | ||| ||||| | ||| ||| | | | |||| Sbjct 141477 CATTTGAATAGT--TGTTTTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCCTGATT 141420 Query 68602 TCATCTGGAA--GGCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTG 68658 || | |||| | ||| ||||||| || |||||| || ||||| | || || Sbjct 141419 TCTTTAGGAATAGCCTCAATATTTTGTATAGATCCATTATTATGAATAATGAGGTTTTTC 141360 Query 68659 ATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATT 68718 || || |||| |||||| | | || |||||| | | | | ||| |||| || | | Sbjct 141359 ATGTCTTCATCCCACAAATCTGCTTCTGTTAAATCCCGCAACAAATGATGATTTACCACT 141300 Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||| | |||| | |||||||||| || | || || | ||| Sbjct 141299 TGAAATTCTCCAGACAGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGAT 141240 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || || || ||||||||||| || |||||||||||||| || | | | | Sbjct 141239 TCATTGTTACCAAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAA 141180 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || |||||| | ||||| || |||| || ||||||||||||||| | Sbjct 141179 TTGCGCAGTCCATGTTTGGCAATTTTTTCCTTTAATACTTGCCAATCCCAAAGATCTGTG 141120 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || ||||| | || || |||| || || | ||| || || | ||| Sbjct 141119 GGAGTTTTGTTCCACATCTCATACTGTAATATACCTTGACTAACAGGACTACCTTCATAA 141060 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 |||||||| || | | ||| || | ||| ||||| || ||||| ||||| |||||| Sbjct 141059 GTTTCATATACACCATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAA 141000 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAG-ACTATCGAATGGATAATG 69077 || ||||| || || | | ||| || | | ||| ||| ||| | |||| | Sbjct 140999 ATAGTTTCAAATATTTGTTGATTCAGTT-------TAATAGCACTTTCGTTTTCATAAGG 140947 Query 69078 TAAAAGAATAAATGCA------TCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 | | || ||| || || || || ||||| || ||||| || ||||||||||| Sbjct 140946 AATGCGCATCAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATG 140887 Query 69132 TCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 69191 |||| ||||||| | | |||||||| | |||||| | || | ||| ||||||||||| Sbjct 140886 TCTCATATTTGATTTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATT 140827 Query 69192 AAGATTTCGGACT-ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC--- 69247 || || | || | || | |||| ||| ||||| || || | ||||| || | Sbjct 140826 CAGGTT-CTGAGTGACAATTTTAGTCACTTCCTTAAGCTTAATAAAATTGTATGTTTTAT 140768 Query 69248 CATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 |||| | ||||||||||| | || | ||||| | ||| || |||||| |||| | Sbjct 140767 CATCATTCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTG 140708 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | || || | | || |||||||| | || || || || || || |||| ||||| Sbjct 140707 CAGATGTGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTT 140648 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 ||||||||||||| | |||||||| ||||| || || ||| | || || |||||||||| Sbjct 140647 TCTGATTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAA 140588 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTG---TAAC 69484 || | || ||||||| |||||| | | ||| |||| || |||| |||| Sbjct 140587 CTTGTGCCTCTATAATAGCTTTCCATAGTATTTGAGC-TTTA--ACTTGCTTGACATAAC 140531 Query 69485 GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | || || | |||||||| | ||| || || ||||| || |||||| || | | Sbjct 140530 GTTTTTCCTGTTCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAGTCTGCTA 140471 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 ||||||| | |||| || ||||| | ||| | |||| | || ||| ||||||| Sbjct 140470 GTCCAGGAGAATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCA 140411 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 |||||| ||| || ||||| | ||| ||| || || ||||| | ||| ||| || || Sbjct 140410 TAAATAAATCTGGGATCCACAAAGC-ATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTG 140352 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || ||| ||||| | ||| | ||| || | ||||| | |||||| || |||| || Sbjct 140351 CCATGATTCTTTTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAG 140292 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 | || | | |||| |||||||||||||| || ||||| | |||||||||||||| || Sbjct 140291 ACAGCAAAGGCTCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTG 140232 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || || | || ||| |||| || |||||| || ||||||||||||| |||||| | Sbjct 140231 TAAACACGCAACATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTG 140172 Query 69844 CCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901 ||| |||| | ||| | | | || || | ||| || || || || || || || | Sbjct 140171 CCTTTTGCTCTAATGCAATGCACAT-GA-ACACCAATACCACCAGCTGACTTTGAAATCA 140114 Query 69902 GAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAA 69961 ||||| | || || ||||||||||| ||||| ||||| |||||| |||| || || Sbjct 140113 ATGCACATTGCTTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAA 140054 Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 |||||||| ||||| ||| | | ||| | ||| ||| | || ||| ||||| Sbjct 140053 GAAAACAGGAAGACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGT 139994 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCAC 70080 | || || |||||||||| | | ||||||||| | ||||| | || ||||| ||| Sbjct 139993 GGGTAAAATATTTTTCAGATAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTCAC 139934 Query 70081 TGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 ||| ||||| || | || | ||| ||||||||||| |||| Sbjct 139933 -CATGTATTCCAATAGATACTCTCATTAACATATGCTGTGGTC 139892 Score = 89.7 bits (98), Expect = 7e-13 Identities = 122/169 (72%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 |||| ||||||| |||||||| || || || || || |||| ||| || |||| |||||| Sbjct 139349 AAAT-GTTTTTTAGTTTCCTTATGCAAGTTGGAGATTGCTAATCTAGCAGCTAAAATAGC 139291 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 ||||||||| || | ||||| ||||||||| |||| ||||| | |||| | || Sbjct 139290 ATAGTCAGGGTGGTCAGTAGTCATTGTAGCTGCTGTTTCTGCAGCCAGATTATCAAGCTC 139231 Query 70458 TATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 70506 | ||||| || || ||||| || || ||||||| | |||| Sbjct 139230 CACTGTTGTTACCCCTGAATATATTCCACTTATCACTTTCAATGTTATT 139182 >seq142 Length=7807734 Score = 107 bits (118), Expect = 3e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 |||||||| ||||| | ||||| || || || || || || || ||| |||| |||||| Sbjct 5994340 TACATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGCTTCA 5994281 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 || | ||| ||||| | || ||||| | | ||||||||| ||||||||||| Sbjct 5994280 GTCACTTGGACCTCCTGTGAGAACCTTTCTACAAGATTTTCATTGACTATTCCATCTGAT 5994221 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 || || || |||||||| ||||| |||||||||| ||||| Sbjct 5994220 GCAGCGAAGAATGCCAAAACATGCTTAATAAAATGCCTTTCA 5994179 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | ||| || ||||| ||||||||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || |||| ||||||| || ||||||||||||||||| ||||| || || | Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 39759 CAACAAGTCTCTCTCCGTAACTTG-TATCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 | || | | || || | | | | || | || ||||||| | ||||| |||| Sbjct 5994892 CGACGATACGTTCACCAAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTCAG 5994833 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | ||||| || ||||| |||| || || || || || || Sbjct 5994832 CCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||| | ||| |||||||| |||||||||| || || || || || |||||||| ||| Sbjct 5993895 TTTGACAAATCCACTTCTTCCACTGTCCAAAATGATGCTTCCGCTTTCTTGTACATTTTC 5993836 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 ||||||||| |||| || ||||| || || ||||||| ||||||| Sbjct 5993835 CATATATCAGGATACTGAATTGGGAATATTACAAATCGTCTTGGATT 5993789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686842315814520