Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq142 102 6e-17 >seq142 Length=7807734 Score = 102 bits (112), Expect = 6e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| || || ||||| || || ||||||||||||||| | || |||| Sbjct 5994201 GTTTTGGCATTCTTCGCTGCATCAGATGGAATAGTCAATGAAAATCTTGTAGAAAGGTTC 5994260 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | || || || ||| | | ||||| ||| ||| |||||||| |||||||| || ||| Sbjct 5994261 TCACAGGAGGTCCAAGTGACTGAAGCCAGATTTTTCTATGGGTTCCAAATTGCTATGGAA 5994320 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| | ||||| ||||||||| | || || || || ||||||| |||| Sbjct 5994321 AATGTACATTCTGAAATGTACTCATTACTAATTGACACATACATCAGAGAT 5994371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || |||||||| |||| ||| |||||| |||||||||| ||||| | || Sbjct 5993801 TTTGTAATATTCCCAATTCAGTATCCTGATATATGGAAAATGTACAAGAAAGCGGAAGCA 5993860 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 ||||||||||||| |||||||| |||||| Sbjct 5993861 TCATTTTGGACAGTGGAAGAAGTGGATTTG 5993890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418492946715