Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2594 185 1e-41 >seq2594 Length=7326867 Score = 185 bits (204), Expect = 1e-41 Identities = 899/1408 (64%), Gaps = 44/1408 (3%) Strand=Plus/Minus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 || ||| |||| || || | |||| | || ||||| ||||||| ||||| | ||||| Sbjct 141279 TCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTG 141220 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 || ||||| || |||||||| || || || | ||| || || || || | | Sbjct 141219 AGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCCATGTTTGGC 141160 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT-TGG---TTTCACCTTCCCACA 110873 || |||||| | || | ||| || | || || ||| ||| | ||||| Sbjct 141159 AATTTTTTCCTTTAATACTTGCCAATCCCAAA-GATCTGTGGGAGTTTTG---TTCCACA 141104 Query 110874 TGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTT 110933 | ||| |||| | | ||||| | ||| ||| ||| | |||||||| ||| | Sbjct 141103 TCTCATACTGTAATATACCTTGACTAACAGGACTACCTTCATAAGTTTCATATACACCAT 141044 Query 110934 GGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATAC 110993 ||| |||||||| || || || || | | | | ||| || |||||||| || Sbjct 141043 ATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTT 140984 Query 110994 GAGCATTCATCTCCTTGGC---TTCATCTGAATCA--AATGCGTAGCGGCACAAAATAAA 111048 | ||||| | | || ||| | | || | |||||| | | || | ||| Sbjct 140983 GTTGATTCAGTTTAATAGCACTTTCGTTTTCATAAGGAATGCGCATC-----AATACAAA 140929 Query 111049 TACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCG 111108 | || || | ||| || ||||| | ||||||||||| |||| |||||| || || Sbjct 140928 TGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTT 140869 Query 111109 CGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 || ||| || |||||||| || ||||| | | || || || | || |||| Sbjct 140868 TGCT-TCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAA 140810 Query 111168 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT---CTTCATTGACAT 111224 | || || | ||| | ||| || ||| |||| || || | | ||||| ||| Sbjct 140809 TTTTAGTCACTTCCTTAAGCTT-----AAT-AAAATTGTATGTTTTATCATCATTCACAA 140756 Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 || | | || || |||||||||||||| || || || ||||| | |||||||| Sbjct 140755 ACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACT 140696 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | |||||||||||| |||||| | |||||| || |||||||| || || ||||||| Sbjct 140695 CAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCT 140636 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | | || || |||||||| || ||||| || || || || || || |||| | | Sbjct 140635 TTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTA 140576 Query 111405 GAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGC---CCGTCCCTCCGCC 111460 |||||| ||||| | || | ||| | | | || ||| | ||| ||| Sbjct 140575 TAATAGCTTTCCATAGTATTTG-AGCT--TTAACTTGC-TTGACATAACGTTTTTCCTGT 140520 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520 || || ||| ||||| || ||||| ||||||||| ||| | || || || | Sbjct 140519 TCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAGTCTGCTAGTCCAGGAGAA 140460 Query 111521 TTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCT 111580 | | || || | |||| ||| | || || |||||| || ||||| || | ||| Sbjct 140459 TCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCT 140400 Query 111581 GGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 || ||||||| | | || || |||| | | | || | || || | || || || Sbjct 140399 GGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTGA-CTTCCTCTTTGCCATGATTCTT 140341 Query 111640 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 111699 | || || | || || | ||||| || ||||| ||||| | ||||| || | | Sbjct 140340 TTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGC 140281 Query 111700 TCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||| ||| | ||| |||||| ||||| | || ||| ||| | || || | Sbjct 140280 TCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAA 140221 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| |||| || ||||| ||| |||||||| || |||| | || ||||| Sbjct 140220 CATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCT 140161 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | ||| | || | |||||||| ||||| ||||||| || ||||| | | | Sbjct 140160 AATGCAATGCACATGAACACCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTT 140101 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 | ||| |||| || || | || ||| || || | || | ||| || || || Sbjct 140100 TAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGA 140041 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-C 111995 || ||| |||||||| || ||||| ||||| ||||| ||||||| | || ||| Sbjct 140040 CAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGGGT-AAAATATT 139982 Query 111996 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 || || | | |||||| | | ||| |||||| ||||| || || || || | Sbjct 139981 TTTCAGATAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAA 139922 Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083 | | || | ||| ||||| | |||||| Sbjct 139921 TAGATACTCTCATTAACATATGCTGTGG 139894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627971214352800