Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2594 181 1e-40 >seq2594 Length=7326867 Score = 181 bits (200), Expect = 1e-40 Identities = 837/1311 (64%), Gaps = 48/1311 (4%) Strand=Plus/Minus Query 118173 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 118232 ||||| | || ||||| | ||| | |||||||| | ||||||||||| | ||||| Sbjct 141278 CGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGA 141219 Query 118233 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTA 118292 || ||||| || || ||||| || || || ||||| || || || || | || | Sbjct 141218 GCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCCATGTTTGGCA 141159 Query 118293 ATGCGTTCCTTGAGAGCGTCCCAGTCGTA-------GTTG-AGCTTTGTCTCCCCCTGCC 118344 || |||||| | | | ||| || | || | || ||||| || Sbjct 141158 ATTTTTTCCTTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTT--------CC 141107 Query 118345 ACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGC 118404 |||| ||| |||| | |||||||| | || || ||| | || |||||| | Sbjct 141106 ACATCTCATACTGTAATATACCTTGACTAACAGGACTACCTTCATAAGTTTCATATACAC 141047 Query 118405 CCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAA 118464 | | || ||||||||| | || || || | || | | ||| || |||||||| | Sbjct 141046 CATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATA 140987 Query 118465 TGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAAT 118523 | | ||||| | | || ||| ||| | | || | ||| ||| | |||| Sbjct 140986 TTTGTTGATTCAGTTTAATAGCACTTTCGTTTTCATAAG-GAATGCGCATCAATACAAAT 140928 Query 118524 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGA 118583 || || | ||| || ||||| | ||||| || | |||||||||||| || ||| Sbjct 140927 GTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTT 140868 Query 118584 GCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 118642 || ||| ||| |||||||| || ||| |||| |||| || || | ||||||| Sbjct 140867 GC-TTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAAT 140809 Query 118643 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG---TCTCTTCATTGACATA 118699 || || | ||| | ||||| |||| |||| || | | || ||||| ||| | Sbjct 140808 TTTAGTCACTTCCTTAAGCT-----TAAT-AAAATTGTATGTTTTATCATCATTCACAAA 140755 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 | || | || || || |||| ||| ||||| | || ||||| | |||||||| Sbjct 140754 CATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTC 140695 Query 118760 TATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819 | |||||| || |||||||| | |||||| |||||||| || || ||||| ||| Sbjct 140694 AACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTT 140635 Query 118820 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 118879 | | ||||| |||||||| || ||||| ||||| || || || || ||| | || | Sbjct 140634 TCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTAT 140575 Query 118880 AATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCC---T 118935 |||||| ||||| | || | |||| || | || ||| | | | |||| | Sbjct 140574 AATAGCTTTCCATAGTATTTG-AGCTTTAAC--TTGC-TTGACATAACGTTTTTCCTGTT 140519 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGC 118993 | || ||| ||||| || ||||| || |||||| || | |||| || || || | Sbjct 140518 CATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAG--TCTGCTAGTCCAGGAGA 140461 Query 118994 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 119053 | || ||||| | ||| ||| | || | |||||| || ||||| || | || Sbjct 140460 ATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATC 140401 Query 119054 TGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 119113 ||||||||| | || |||| || || | | |||| || | || ||||| Sbjct 140400 TGGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTT 140341 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 ||| |||||||| || | ||||| || ||||| || || | ||| || || | | Sbjct 140340 TTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGC 140281 Query 119174 CCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 || || | ||| | || | ||||| || |||||| ||| | ||||| | Sbjct 140280 TCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAA 140221 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCC--CCGAATACGAGACTTATTGGCT 119288 ||| |||| | ||||| || |||||||| || | ||| | | || || ||| Sbjct 140220 CATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCT--TTTGCT 140163 Query 119289 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 119348 || | || | || | ||||||||| || || ||||||| || || || | | Sbjct 140162 CTAATGCAATGCACATGAACACCAATACCACCAGCTGACTTTGAAATCAATGCACATTGC 140103 Query 119349 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 119408 | | | || | || ||||| || || |||| | || |||| | || || ||| Sbjct 140102 TTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAA 140043 Query 119409 GACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 |||| ||||| || || || |||| ||||||||||| | |||||| Sbjct 140042 GACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGG 139992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618375343203080