Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2594 179 4e-40 seq2597 84.2 3e-11 >seq2594 Length=7326867 Score = 179 bits (198), Expect = 4e-40 Identities = 884/1384 (64%), Gaps = 40/1384 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||||| ||| | || | || || || ||||| ||||| |||||| ||| Sbjct 139894 CCACAGCATATGTTAATGAGAGTATCTATTGGAATACATGGTGAAGATATTGATGCTGCT 139953 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 104340 | | |||||| | | || || ||| || | ||||||| ||||| ||||| Sbjct 139954 ATCAACACATACAATTTATTATCTGAAAAATATTTT-ACCCACGCAAGTCCAACTCTCTT 140012 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||| || |||||||| || |||| || || ||| | || | || || || Sbjct 140013 TGCTGCTGCAACCCCAAGACCTCAGTTGTCTTCCTGTTTTCTTGTTGCAATGAAAGATGA 140072 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | || || |||| ||| | | | | ||||| || ||||||| ||||| Sbjct 140073 CAGCATTGAGGGGATATATGACACTTTAAAGCAATGTGCATTGATTTCAAAGTCAGCTGG 140132 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | || | ||| | ||||| || | |||| || ||||| Sbjct 140133 TGGTATTGGTGTTCATGTGCATTGCATTAGAGCAAAAGGCACCTATATTGCTGGAACAAA 140192 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| ||| ||||| || |||| ||| | || || | ||| ||| || | ||||| Sbjct 140193 TGGAGTTTCAAATGGTGTTGTTCCTATGTTGCGTGTTTACAACAACACTGCCAGATATGT 140252 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||||| ||| | ||| ||| | | || ||||| | ||||| ||||| || Sbjct 140253 TGATCAAGGTGGAAATAAACGACCAGGAGCCTTTGCTGTCTACTTAGAGCCTTGGCATGC 140312 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC- 104696 ||||| | || || | || ||| || || || | ||||| | | | || Sbjct 140313 AGATATATTCGAATTTTTGGATTTGAAAAAGAATCATGGCAAAGAGGAAGT-CAGAGCAA 140371 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | || || |||| ||| | ||||| |||||| | || ||||| | |||||| | | || Sbjct 140372 GAGAACTGTTCTATGCTTTGTGGATCCCAGATTTATTTATGAAACGCGTTGAGAAAAATG 140431 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAG 104815 | ||| ||| | || || | | | ||||| || | || || | ||||||| Sbjct 140432 AAGACTGGAGTCTTATGTGCCCTCATGATTCTCCTGGACTAGCAGACTGTTG-GGGTGAG 140490 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGA---GGAAGAAGGTCGGGCGACTGCGACGGTG 104872 || ||||| || || || ||| || || |||| || || | | || | || Sbjct 140491 GAATTTGAGGCACTCTATGAAAAATATGAACAGGAAAAACGTTATGTCAA-GCAA--GTT 140547 Query 104873 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 |||| | || | |||||||||||| | || | ||| || ||||| |||||||| Sbjct 140548 AAAGCT-CAAATACTATGGAAAGCTATTATAGAGGCACAAGTTGAAACTGGCACACCATA 140606 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 ||||| || || || |||||||| |||||||||||| || |||||||| || || Sbjct 140607 TATGCTATATAAGGATGCCTGTAATAGAAAGAGTAATCAGAAAAATTTGGGCACAATTAA 140666 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | ||| | ||||||||||| | || | ||| |||||| || || ||||| Sbjct 140667 GTGCAGCAACTTGTGTACAGAAATTGTTGAGTACACATCTGCAGATGAAACAGCAGTGTG 140726 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATTTGATT 105110 || | ||||| || || | | || |||| || || || ||| |||| ||| Sbjct 140727 CAATTTGGCATCCATTGCGTTAAATATGTTTGTGAAT---GATGATAAA-ACATACAATT 140782 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | || || | ||||| || |||| |||||| | ||||| || | | |||||||| Sbjct 140783 TTATTAAGCTTAAGGAAGTGACTAAAATTGTCACTCAGAACCTGAATAAAATTATTGATG 140842 Query 105171 GAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || ||||| || || ||| || ||||| ||||||||||| | || ||||| Sbjct 140843 TCAACTTTTATCCAGTGCCAGA-AGCAAAGAAATCAAATATGAGACATAGACCTATTGGG 140901 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT--TGATTCCG 105287 | ||||| |||||| | || || ||| | | | | |||||| | || Sbjct 140902 ATTGGTGTGCAGGGTTTAGCTGACACATT-----TGTATTGATGCGCATTCCTTATGAAA 140956 Query 105288 ACGAA---GCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 ||||| || | || | ||| | |||||||| || || ||| | | ||| | | Sbjct 140957 ACGAAAGTGCTATTAAACTGAATCAACAAATATTTGAAACTATTTATTATGGTGCTTTAG 141016 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 | || |||| || |||||||| ||||| ||||||||| | ||| ||| ||| | Sbjct 141017 AAGCCAGTTGCGAATTGGCAGAAAAATATGGTGTATATGAAACTTATGAAGGTAGTCCTG 141076 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGG---GAAGGTGAGACCAAGCTTCACTACG 105461 | ||||| | | || | ||| |||||| || | || | ||| | | Sbjct 141077 TTAGTCAAGGTATATTACAGTATGAGATGTGGAACAAAACTCCCACAGATCTT---TGGG 141133 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||| ||| | |||||| || | | || || || || || || || | Sbjct 141134 ATTGGCAAGTATTAAAGGAAAAAATTGCCAAACATGGACTGCGCAATTCACTTCTAATAG 141193 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || |||||||| || ||||| || ||||| | ||||| ||||||| ||||| || | Sbjct 141194 CCCCTATGCCAACTGCTTCCACTGCTCAAATACTTGGTAACAATGAATCATTTGAGCCTT 141253 Query 105582 ACAC 105585 ||| Sbjct 141254 TCAC 141257 >seq2597 Length=1471098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 169358 AGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTC 169417 || |||||||||||||| || || || || || || ||| |||| || || | |||| Sbjct 929085 AGTGGGAAGACACCGTAATGGTCTCGGCCCACAACACTGAGCCCCGACACAGCCAAAGTC 929144 Query 169418 TTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCC 169477 || || ||||| ||||| |||| ||| ||||| || || | ||| ||||| Sbjct 929145 TTAGCTGAGTCTCCCTCAGTGAGGATCAGCGTGCAGAGATGAGCATTCCTCGTCCCCGCG 929204 Query 169478 TTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTG 169516 | ||||||||| |||| ||| ||||| || ||| |||| Sbjct 929205 TCGTTCGCATCTTCCAGTTTCGGAATCCCTTTAAGTTTG 929243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583204347645320