Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5264 111 1e-19 >seq5264 Length=5978571 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| |||||||| || ||||| | || || || | Sbjct 3329507 ATGCAAATTTTCGTGAAAACCCTTACTGGTAAGACCATTACTCTGGAAGTTGAGCCTTCT 3329566 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || || || ||||| |||||| |||| || | Sbjct 3329567 GACACCATTGAAAAT--GTGAAGGCGAAGATCCAGGACAAGGAAGGTATTCCCCCAGACC 3329624 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| |||||||| || ||||||||||| || | |||| ||||||||| |||| Sbjct 3329625 AGCAGCGGTTGATTTTTGCTGGTAAACAATTGGAAGATGGCCGCACCTTGTCCGACTACA 3329684 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | ||| | ||| ||||| | ||||| || Sbjct 3329685 ACATCCAGAAGGAGTCTACTCTCCATCTTGTTCTGCGTCTCCGTGGTGG 3329733 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| ||||| ||| || || |||| || ||| | Sbjct 3328823 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTTGAAGTAGAACCTTCA 3328882 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||||||||| |||| || | Sbjct 3328883 GACACCATAGAGAAT--GTGAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACC 3328940 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||| || ||||| ||||| || | |||| ||||||||| |||| Sbjct 3328941 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCTTGTCCGACTACA 3329000 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| || | ||| | || ||||| | ||||| || Sbjct 3329001 ACATCCAGAAAGAGTCTACCCTCCATCTTGTACTGCGTCTCCGTGGTGG 3329049 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || |||||||| |||||||| ||| || || |||| || ||| | Sbjct 3329050 AATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACAATCACCCTTGAAGTGGAACCTTC 3329109 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || || |||||| |||||||| || | || || Sbjct 3329110 TGATACCATAGAAAAT--GTGAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGAC 3329167 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || || |||||||||||| | || || | || | |||||| || || Sbjct 3329168 CAGCAGCGTTTGATCTTCGCCGGAAAACAACTTGAAGATGGCCGTACCTTGTCTGACTAT 3329227 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||||||||||||||| | ||||| || Sbjct 3329228 AACATCCAGAAGGAGTCTACTCTTCATTTGGTTTTGCGTCTCCGTGGTGG 3329277 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || ||||| ||| || || |||| || ||| | Sbjct 3328367 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACCATCACCCTTGAAGTAGAACCTTCA 3328426 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||||||||| |||| || | Sbjct 3328427 GACACCATAGAGAAT--GTGAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACC 3328484 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||| || ||||| ||||| || | |||| ||||||||| |||| Sbjct 3328485 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCTTGTCCGACTACA 3328544 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| || | ||| | || ||||| | ||||| || Sbjct 3328545 ACATCCAGAAAGAGTCTACCCTCCATCTTGTACTGCGTCTCCGTGGTGG 3328593 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||| | || || ||| |||||| | || ||||| | Sbjct 3784591 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACTATTACGTTGGAGGTCGAGCCATCT 3784650 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| || || ||||||||||| | || || | Sbjct 3784651 GATACTATTGAGAAT--GTAAAAGCTAAGATCCAAGACAAAGAAGGCATCCCTCCTGACC 3784708 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || ||||| || || || ||||| || | ||||| | || ||||||| Sbjct 3784709 AGCAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACACTTTCTGATTACA 3784768 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || || |||||||||||||||||||| | || || Sbjct 3784769 ATATCCAGAAGGAATCAACACTGCATTTGGTTTTGCGTTTGAGAGGTGG 3784817 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || ||||| ||| ||||| | || |||||| | Sbjct 3329963 ATGCAGATATTTGTTAAAACCCTGACTGGTAAAACCATTACTTTGGAGGTCGAACCATCT 3330022 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| |||||| ||||| || || | || || | Sbjct 3330023 GACACAATTGAAAAT--GTCAAAGCAAAAATTCAAGACAAGGAGGGCATCCCTCCAGATC 3330080 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | | |||||||| || ||||| |||| || | ||| | | || || |||| Sbjct 3330081 AACAGAGACTTATTTTTGCTGGTAAACAGCTGGAAGATGGACGTACTCTTTCAGACTACA 3330140 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGAC 28020 ||||||||||||| ||| ||||||||||| | || | ||||| ||| || Sbjct 3330141 ACATCCAAAAAGAATCCACCTTGCATTTGGTACTCCGACTCCGTGGTGGCAAC 3330193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355828818043761