Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5264 100 2e-16 >seq5264 Length=5978571 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| ||||| || || ||||| |||||||| || | |||||| || || Sbjct 3328353 CGCAATACCAAGTGTAGAGTCGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCG 3328294 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| || || ||||| || ||||||||||| || | ||| | || |||||| Sbjct 3328293 TCTTCCAACTGCTTTCCAGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCTTTG 3328234 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| ||| | | | | |||||| | || || |||| || || Sbjct 3328233 TCTTGGATTTTGGCTTTTACGTTTTCAATGGTATCGGAAGGTTCTACTTCCAAAGTAATG 3328174 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||||| || |||||||| || ||||| || Sbjct 3328173 GTTTTACCCGTCAATGTCTTAACAAAAATCTGCATTTT 3328136 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || || || || ||||| ||||| | |||||||||| | || || Sbjct 3783887 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCATCTTCT 3783828 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | ||| ||||| ||||| ||||||||||||||||||| || | || |||||||| | Sbjct 3783827 AACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGGATGCCTTCTTTGTCTTGG 3783768 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | | | | ||||| | ||| || || | || ||| |||| Sbjct 3783767 ATTTTAGCCTTAACATTTTCGATAGTATCTGATGGCTCAACTTCTAGTGTTATAGTTTTG 3783708 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || ||||||||||| Sbjct 3783707 CCAGTCAATGTCTTGACGAAGATTTGCAT 3783679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| || |||| || ||| |||| | ||||||||||| || || || || || Sbjct 3783466 TAACAAAGATTTG--CATGCCACCTCGGAGACGTAACACCAAGTGAAGTGTAGATTCCTT 3783409 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| ||||||| | ||| ||| | || || | ||| ||||| || || || | Sbjct 3783408 TTGAATATTGTAATCGGATAATGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAA 3783349 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 ||||| ||||| | ||| | || |||||| || ||| || ||| | || | | Sbjct 3783348 CCGCTGTTGGTCTGGGGGGATGCCCTCTTTATCTTGGATCTTGGCTTTTACATTCTCAAT 3783289 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| | || || |||| ||||| |||||||||||| || || || ||||| Sbjct 3783288 TGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTTCCCGTCAAAGTCTTCACGAAGAT 3783229 Query 39279 TTGCATCTT 39287 ||||| || Sbjct 3783228 CTGCATTTT 3783220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || ||||| ||||| | |||||||||| | Sbjct 3785261 CGCAACACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCA 3785202 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| ||||| ||||| ||||||||||||||||||| || | | |||||| Sbjct 3785201 TCTTCTAACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGGATACCTTCTTTG 3785142 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| || | | | | || || | ||| || || | || ||| Sbjct 3785141 TCTTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCAACTTCTAGTGTTATA 3785082 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| || || || ||||||||||| Sbjct 3785081 GTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 3785047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || ||||| ||||| | |||||||||| | Sbjct 3785717 CGCAACACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCA 3785658 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| ||||| ||||| ||||||||||||||||||| || | | |||||| Sbjct 3785657 TCTTCTAACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGGATACCTTCTTTG 3785598 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| || | | | | || || | ||| || || | || ||| Sbjct 3785597 TCTTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCAACTTCTAGTGTTATA 3785538 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| || || || ||||||||||| Sbjct 3785537 GTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 3785503 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128 || || |||||||| || || ||| || || || ||||| || | |||| || || | Sbjct 3329265 CGCAAAACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGACAAG-GTACGGCC 3329207 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || ||||| ||||| || || || || | |||||||||||| | ||| | | |||||| Sbjct 3329206 ATCTTCAAGTTGTTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCTTT 3329147 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| |||||| || | | | | ||||| | ||||| || | ||||| Sbjct 3329146 GTCCTGGATTTTTGCCTTCACATTTTCTATGGTATCAGAAGGTTCCACTTCAAGGGTGAT 3329087 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || ||||| || ||||| ||||| Sbjct 3329086 TGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 3329051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| | ||| |||||||| || || || || | ||| || ||| | || || Sbjct 3330171 ACCAAATGCAAGGTGGATTCTTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCATCTTCC 3330112 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || ||||| ||||| | ||| || || | || | || ||| ||||| || Sbjct 3330111 AGCTGTTTACCAGCAAAAATAAGTCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCT-TG 3330053 Query 39196 ATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 | ||| || ||||| | | | || || | || || |||| || || |||| Sbjct 3330052 AATTTTTGCTTTGACATTTTCAATTGTGTCAGATGGTTCGACCTCCAAAGTAATGGTTTT 3329993 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||||||||| || ||||| Sbjct 3329992 ACCAGTCAGGGTTTTAACAAATATCTGCAT 3329963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || ||||||||||||| ||| || ||| | || || | ||||| || ||||| Sbjct 3786377 TCTTTCTGAATATTATAATCGGAAAGAGTGCGTCCATCTTCTAATTGTTTCCCAGCAAAA 3786318 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | |||||| || | || | | ||| || || ||||| ||| | | Sbjct 3786317 ATGAGTCTCTGCTGATCAGGAGGGATACCCTCCTTATCTTGAATTTTGGCTTTAACATTT 3786258 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||||| | |||||| || | || ||| ||||||| ||||| || |||||| Sbjct 3786257 TCAATAGTATCTGAAGGCTCCACTTCTAAAGTAATAGTTTTTCCAGTCAGAGTCTTAACA 3786198 Query 39274 AAGATTTGCAT 39284 || |||||||| Sbjct 3786197 AAAATTTGCAT 3786187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429505064721359