Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5264 132 3e-26 seq2594 131 1e-25 >seq5264 Length=5978571 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| ||||| | || || || || || Sbjct 3785959 ATGCAAATTTTCGTCAAGACATTGACCGGCAAAACTATCACATTAGAGGTGGAGCCCTCG 3786018 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || |||||| ||||||||||| | || || || || Sbjct 3786019 GATACTATTGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 3786078 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | ||||||| || || ||||| || ||||| | |||||| || || |||||| Sbjct 3786079 CAGAGGCTAATATTCGCAGGTAAACAGCTAGAAGATGGACGCACACTATCTGACTACAAC 3786138 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || ||||| || |||||||||||| | ||| | |||||| Sbjct 3786139 ATTCAAAAGGAATCCACTTTGCATTTAGTTTTACGATTGAGGGGAGGA 3786186 Score = 129 bits (142), Expect = 4e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| |||||||| ||||| || ||||| || | | Sbjct 3328367 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACCATCACCCTTGAAGTAGAACCTTCA 3328426 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 3328427 GACACCATAGAGAATGTGAAGGCAAAGA-TCCAAGACAAAGAAGGCATTCCCCCAGACCA 3328485 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| |||||||| ||||||| | ||||| || ||| ||||| Sbjct 3328486 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCTTGTCCGACTACAA 3328545 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 3328546 CATCCAGAAAGAGTCTAC 3328563 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||||||||| || || ||||| || ||| | || || || | | Sbjct 3329963 ATGCAGATATTTGTTAAAACCCTGACTGGTAAAACCATTACTTTGGAGGTCGAACCATCT 3330022 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| ||||||| ||||| || || | || ||||||||| Sbjct 3330023 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGACAAGGAGGGCATCCCTCCAGATCAA 3330082 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| |||||||| | ||| ||| | || |||||| Sbjct 3330083 CAGAGACTTATTTTTGCTGGTAAACAGCTGGAAGATGGACGTACTCTTTCAGACTACAAC 3330142 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||||||| ||||| || ||||| || Sbjct 3330143 ATCCAAAAAGAATCCACCTTGCATTTGGT 3330171 Score = 125 bits (138), Expect = 5e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| |||||||| ||||| || ||||| || | | Sbjct 3328823 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTTGAAGTAGAACCTTCA 3328882 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 3328883 GACACCATAGAGAATGTGAAGGCAAAGA-TCCAAGACAAAGAAGGCATTCCCCCAGACCA 3328941 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| |||||||| ||||||| | ||||| || ||| ||||| Sbjct 3328942 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCTTGTCCGACTACAA 3329001 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 3329002 CATCCAGAAAGAGTCTAC 3329019 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || || | ||||||||||| ||||| | ||||| || | Sbjct 3783220 AAAATGCAGATCTTCGTGAAGACTTTGACGGGAAAAACCATCACCTTGGAAGTAGAACCA 3783279 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| | ||||| || || || ||||| || | || ||||| Sbjct 3783280 TCTGATACAATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAGGGCATCCCCCCAGAC 3783339 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||||| || || || || ||||| || ||||||| | |||||| ||| ||||||| Sbjct 3783340 CAACAGCGGTTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACATTATCCGATTAC 3783399 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || ||| | || || || ||| | | ||||| || Sbjct 3783400 AATATTCAAAAGGAATCTACACTTCACTTGGTGTTACGTCTCCGAGGTGG 3783449 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| ||||| |||||||| || | | ||||| || | | Sbjct 3329278 AATGCAGATCTTTGTCAAAACACTCACCGGAAAAACCATACCCTTGGAAGTAGAACCTTC 3329337 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | |||| | || || |||||| | || ||||||| Sbjct 3329338 TGACACAATTGAGAATGTCAAAGCTAAAA-TCCAGGATAAGGAAGGTATCCCCCCAGATC 3329396 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||||||||| ||||| || |||||||||||||| | |||||| | || || | Sbjct 3329397 AGCAGCGTTTAATCTTTGCTGGTAAACAACTGGAAGATGGACGCACCCTCTCTGACTATA 3329456 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || || || ||||| | ||||| || Sbjct 3329457 ATATTCAGAAGGAATCCACCCTTCATTTGGT 3329487 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||| | || || ||||| ||||| || || ||||| || | Sbjct 3784819 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACTATCACACTTGAGGTTGAGCCCTCT 3784878 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| ||||| ||||||||||| | || || || ||| Sbjct 3784879 GATACCATAGAAAACGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCAA 3784938 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || || ||| ||||||| | |||||| || ||||||||| Sbjct 3784939 CAACGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGCACACTATCCGATTACAAT 3784998 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| || ||| | || || || Sbjct 3784999 ATTCAGAAAGAATCTACACTTCACTTGGT 3785027 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| ||||| || | ||||| ||||| || ||| | ||||| || | Sbjct 3328136 AAAATGCAGATTTTTGTTAAGACATTGACGGGTAAAACCATTACTTTGGAAGTAGAACCT 3328195 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| ||||| ||||| ||||||||||| | || || ||| Sbjct 3328196 TCCGATACCATTGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGAT 3328255 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || ||||| || || || ||||||||| ||||| | || || Sbjct 3328256 CAGCAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAAGACGGTCGCACACTTTCTGACTAT 3328315 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || ||||| || || || |||| || || || Sbjct 3328316 AATATTCAAAAGGAATCGACTCTACACTTGGTATT 3328350 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||| || |||||||| ||||| || || || || | | Sbjct 3328594 AATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACAATCACCCTTGAGGTGGAACCTTC 3328653 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || |||||| |||||||| || | || ||||| || Sbjct 3328654 TGATACCATAGAAAATGTGAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACCA 3328713 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || |||||||||||||| | ||||||| | || || || Sbjct 3328714 GCAGAGACTGATTTTCGCTGGTAAACAACTGGAAGATGGACGCACTCTCTCGGACTATAA 3328773 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || ||||| | ||| | ||||| Sbjct 3328774 TATTCAGAAGGAATCCACTCTCCATCTTGTTTT 3328806 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || || ||||| || || | || || || | | Sbjct 3784591 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACTATTACGTTGGAGGTCGAGCCATCT 3784650 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | ||||| || || ||||||||||| | || || || || Sbjct 3784651 GATACTATTGAGAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 3784710 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| ||||| || ||||||| | |||||| | |||||||| Sbjct 3784711 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACACTTTCTGATTACAAT 3784770 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||| | ||||| ||||| | ||| |||| || Sbjct 3784771 ATCCAGAAGGAATCAACACTGCATTTGGTTTTGCGTTTGAGAGGTGG 3784817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || ||||| || || || |||||||| | | Sbjct 3785047 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACTATAACACTAGAAGTTGAGCCATCA 3785106 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | |||| | |||| | |||||||||||| | || || || || Sbjct 3785107 GACACTATCGAAAATGTTAAGGCTAAAA-TCCAAGACAAAGAAGGTATCCCACCCGACCA 3785165 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||||| | || ||||| ||||| || | ||||| | ||| |||||| |||||| Sbjct 3785166 GCAGCGTCTTATTTTTGCTGGCAAGCAGTTAGAAGATGGACGAACACTTT--CTGATTAC 3785223 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || || || ||| | || || || || Sbjct 3785224 AATATTCAGAAGGAATCTACACTTCACTTGGTGTT 3785258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || ||||| || || || |||||||| | | Sbjct 3785503 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACTATAACACTAGAAGTTGAGCCATCA 3785562 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | |||| | |||| | |||||||||||| | || || || || Sbjct 3785563 GACACTATCGAAAATGTTAAGGCTAAAA-TCCAAGACAAAGAAGGTATCCCACCCGACCA 3785621 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||||| | || ||||| ||||| || | ||||| | ||| |||||| |||||| Sbjct 3785622 GCAGCGTCTTATTTTTGCTGGCAAGCAGTTAGAAGATGGACGAACACTTT--CTGATTAC 3785679 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || || || ||| | || || || || Sbjct 3785680 AATATTCAGAAGGAATCTACACTTCACTTGGTGTT 3785714 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || ||||| || || || |||||||| | | Sbjct 3783679 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACTATAACACTAGAAGTTGAGCCATCA 3783738 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | |||| | |||| | |||| | ||||||||||| | || || || || Sbjct 3783739 GATACTATCGAAAATGTTAAGGCTAAAA-TCCAAGACAAAGAAGGCATCCCACCCGACCA 3783797 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||||| | || ||||| ||||| || | ||||| | ||| |||||| |||||| Sbjct 3783798 GCAGCGTCTTATTTTTGCTGGCAAGCAGTTAGAAGATGGACGAACACTTT--CTGATTAC 3783855 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || ||| | || || || Sbjct 3783856 AATATTCAGAAGGAATCTACACTTCACTTGGT 3783887 >seq2594 Length=7326867 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| ||||| || || || || || ||||| || || || || | | Sbjct 5012097 AATGCAGATCTTCGTAAAAACGCTAACAGGGAAGACCATCACCCTTGAGGTCGAAGCTTC 5012038 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | |||| | ||||| | |||| || || || |||||| | || ||||| | Sbjct 5012037 CGACACTATCGAAAATGTTAAAGCCAAAA-TTCAGGATAAGGAAGGTATTCCACCAGACC 5011979 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| | || |||||||||||||| ||||||| | |||||||| || || | Sbjct 5011978 AGCAGCGACTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGCACTTTGTCAGACTATA 5011919 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || || || || ||||| || || || || || |||||| ||||||| Sbjct 5011918 ATATTCAGAAGGAATCCACCTTGCACTTGGTGTTGAGGTTGAGAGGAGG 5011870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337977702773444