Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq557 262 3e-65 seq5264 102 7e-17 >seq557 Length=1183051 Score = 262 bits (290), Expect = 3e-65 Identities = 589/877 (67%), Gaps = 11/877 (1%) Strand=Plus/Minus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 ||||| || ||||||||||| || || | || || || || ||| ||||| | Sbjct 1026967 GCGTATTTCGTCGAATGGGGCGTCTATCCTAGAAAATTCCCGGTAGACCGCGTGCCTATT 1026908 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 ||||||||| | |||||||||||||| || || ||||| || || ||||| ||||||||| Sbjct 1026907 CCCAATTTAACCCATTTGCTGTACGGCTTCATCCCAATTTGCGGAGGCGATGGCATCAAC 1026848 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | || || |||||||| | |||||||| ||||||||| |||| || Sbjct 1026847 GACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTTTGCAGCGATCGTGCAGCGGCCGA 1026788 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || ||||| |||||||| || || ||||| || | || ||||| || || || Sbjct 1026787 GAGGACTTCAAGGTGTCCATCCATGATCCATGGGCAGCTCTCCAGAAACCACAGAAGGGA 1026728 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || | | ||||||||||| ||||| ||||||||||| || |||||| | ||| Sbjct 1026727 TTGTCTTCATGGAACGAGCCATACAAGGGCAACTTTGGCCAGTTGATGATGTTGAAACAA 1026668 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTTT 109500 || || ||| || | ||||| | || || || || || ||||| ||| | || || || Sbjct 1026667 GCTAAGCCTGACCTGAAAATCTTGCCATCTATCGGTGGATGGACTTTGGCTGATCCATTC 1026608 Query 109501 TATTTTATGCAC-GATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTT 109559 | | || | ||| || | || |||| || || | || || || ||| | Sbjct 1026607 T-TCTTCTTCACTGACAAATCTAAGAGAGATCGGTTTGTAGCTTCAGTTAAAGATTTTCT 1026549 Query 109560 ACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGGG 109619 || |||||||||||||| || || || || |||||||| || || ||||| || || Sbjct 1026548 GGAAACCTGGAAATTCTTTGATGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAAGG 1026489 Query 109620 TGCCAATCCGAGTCTCGGC-GACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTAA 109678 || ||||| | |||||| | | ||| ||| | | |||| | || | | Sbjct 1026488 CGCTAATCCCAACCTCGGCAGTCCCAA----AGACGGTGATGTGTACGTAAGTCTGATGA 1026433 Query 109679 AAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAACAAAACGTACGAATTGA 109738 | || | || | ||| | |||| || | | | || || | ||||| ||| Sbjct 1026432 AGGAACTCCGTGAGATGCTCAACGAGTTATCAGCTGAAACTGGAAAGAAATACGAGCTGA 1026373 Query 109739 CGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCAAC 109798 | ||| || ||||| |||| |||||||| | ||||| | ||| || || Sbjct 1026372 CTTCCGCTATCAGCGCAGGTTGGGATAAAATCCAAGTGGTGAACTACAACGAAGCTCAGA 1026313 Query 109799 AATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAAC-ACG 109857 |||| ||||| | ||||| || |||| ||||| |||||||| || ||||||||| || Sbjct 1026312 AATACATGGACCATATATTCTTCATGAGCTACGACTTCAAAGGAGCCTGGTCAAACGAC- 1026254 Query 109858 GAC-TTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACAC 109916 || || ||| |||| ||| || |||||||||| | |||| ||||| || ||||| Sbjct 1026253 -ACTTTGGGCCATCAGACGTCTTTGTACGCGCCTTCATGGAGGCCAAAGGAGACTTACAC 1026195 Query 109917 GACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAAT 109976 ||| ||| | | || ||| ||||| ||| ||| | || || ||| | | Sbjct 1026194 GACAGATTTCGGTGTTAAATTCCTGTTAGCTCAAGGTGTGAGTTCGAAGAAGATTGTTGT 1026135 Query 109977 TGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTC 110013 || ||||| ||||| ||| | || ||||| || ||| Sbjct 1026134 AGGTGTAGCTATGTATGGCAGAGGATGGACCGGTGTC 1026098 >seq5264 Length=5978571 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || | ||||| ||| || | |||||||| ||||| |||||||| ||||| || | Sbjct 3786185 CCTCCCCTCAATCGTAAAACTAAATGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAG-- 3786128 Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||||| | | |||||| | ||||| || || |||| ||||| || ||||| || Sbjct 3786127 ATAGTGTGCGTCCATCTTCTAGCTGTTTACCTGCGAATATTAGCCTCTGCTGGTCAGGGG 3786068 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | |||||||||||| |||||| ||||||| | | || || | || | Sbjct 3786067 GAATGCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCAATAGTATCCGAGGGCTCCA 3786008 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | || ||||||||||| |||||||| || | ||||||||||| Sbjct 3786007 CCTCTAATGTGATAGTTTTGCCGGTCAATGTCTTGACGAAAATTTGCAT 3785959 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGG--AATCTT 101087 |||| ||| | || |||||||| |||||||||||||||| ||||| | | ||||| Sbjct 3783659 ACCAAGTGAAGTGTAGATTCTTTCTGAATATTGTAATCGG--ATAGTGTGCGTCCATCTT 3783602 Query 101088 CCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGG 101147 |||| || || || ||| | || || | || |||||| || | ||| || ||||| Sbjct 3783601 CCAACTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTT 3783542 Query 101148 CAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTT 101207 |||||| ||||||| | | || |||| | | | ||| | |||||| |||| Sbjct 3783541 GAATTTTAGCCTTCACATTTTCGATAGTGTCTGATGGCTCTACTTCAAGGGTAATTGTTT 3783482 Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || ||||| ||||||| ||| |||||||| Sbjct 3783481 TTCCAGTCAAGGTTTTAACAAAGATTTGCAT 3783451 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| ||||| | | |||||||| ||| | || ||||| ||||||||||||||||||| Sbjct 3783451 TGCCACCTCGGAGACGTAACACCAAGTGAAGTGTAGATTCCTTTTGAATATTGTAATCGG 3783392 Query 101070 CCATAGTTTTGG--AATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTAC 101127 ||| | | | ||||||||| || ||||| || | || | || ||||||||| Sbjct 3783391 --ATAATGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAACCGCTGTTGGTCTGG 3783334 Query 101128 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGT 101187 ||| | ||| ||||| || || || ||| |||| | | || || | | || Sbjct 3783333 GGGGATGCCCTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATTGTATCAGATG--GT 3783276 Query 101188 TGT--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 | | ||| | ||| || ||||| |||||||| || || | || || |||||| Sbjct 3783275 TCTACTTCCAAGGTGATGGTTTTTCCCGTCAAAGTCTTCACGAAGATCTGCATT 3783222 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 ||||||||||||| ||| || | || | || |||||||| |||||||| ||||||| Sbjct 3784133 CCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGG-- 3784076 Query 101072 ATAGTTTTGG--AATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||||| | | ||||||||| || ||||| || | || | | ||| |||||| | Sbjct 3784075 ATAGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAG 3784016 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | |||||| ||||| ||||| ||||| | | | || || || | ||| Sbjct 3784015 GAATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTC--TGAAGGTTC 3783958 Query 101190 T--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || | || || |||||||| ||||| || || | || |||||||| Sbjct 3783957 TACCTCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3783907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 ||||||||||||| ||| || | || | || |||||||| |||||||| ||||||| Sbjct 3784589 CCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGG-- 3784532 Query 101072 ATAGTTTTGG--AATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||||| | | ||||||||| || ||||| || | || | | ||| |||||| | Sbjct 3784531 ATAGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAG 3784472 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | |||||| ||||| ||||| ||||| | | | || || || | ||| Sbjct 3784471 GAATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTC--TGAAGGTTC 3784414 Query 101190 T--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || | || || |||||||| ||||| || || | || |||||||| Sbjct 3784413 TACCTCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3784363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409622141206437