Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq142 107 2e-18 >seq142 Length=7807734 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || || ||||| ||||||| |||||||||||||||| |||||| |||||||| || Sbjct 5994364 ATGTATGTGTCAATTAGTAATGAGTACATTTCAGAATGTACATTTTCCATAGCAATTTGG 5994305 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 || || || || |||| ||||| || ||||| || || | | || |||||||| | Sbjct 5994304 AACCCATAGAAAAATCTGGCTTCAGTCACTTGGACCTCCTGTGAGAACCTTTCTACAAGA 5994245 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 ||||| || ||||| || || || || || || ||||||||||| Sbjct 5994244 TTTTCATTGACTATTCCATCTGATGCAGCGAAGAATGCCAAAACATG 5994198 Score = 102 bits (112), Expect = 7e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 5043 AAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATA 5102 ||||| |||||||| || |||||||| || ||||||||||| |||||||| ||| ||| Sbjct 5993889 AAATCCACTTCTTCCACTGTCCAAAATGATGCTTCCGCTTTCTTGTACATTTTCCATATA 5993830 Query 5103 TCAGGATACTGAATCGGAAGTATGACAAATC 5133 |||||||||||||| || | ||| ||||||| Sbjct 5993829 TCAGGATACTGAATTGGGAATATTACAAATC 5993799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427009300263419