Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2594 612 3e-170 seq142 104 3e-17 >seq2594 Length=7326867 Score = 612 bits (678), Expect = 3e-170 Identities = 1222/1791 (68%), Gaps = 32/1791 (2%) Strand=Plus/Minus Query 76767 TTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTAC 76826 ||| ||||||| | |||||||| || | | | || ||||| ||||||| ||| ||| Sbjct 141662 TTACTCTTATCTACAGTAAACTGGATAGCATTGGCAGCAGGTTTAGTACGTAAATAATAC 141603 Query 76827 ATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAA 76886 || ||||| || | ||||| ||||| | || ||||| || |||| |||| ||| Sbjct 141602 ATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAATGTATAGACGTCAATTTGCCGTAA 141543 Query 76887 CTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCA 76946 |||| | || | ||| ||||| | ||||| || ||||| || || ||||||||||| Sbjct 141542 TTAGGGGCAGCCACATGTATATTGAATGACTGGCTCTGATCTATAAATGCTCCTCTATCT 141483 Query 76947 GCCGCCATTTTTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTT 77004 || ||||||| ||| | || ||||| | ||| ||||| | |||||| | | | Sbjct 141482 GCGGCCATTTGAATAGTTGT--TTTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCC 141425 Query 77005 TGATATCATCTGGAAGG---TTTGTATTTTGAATGGAACCACCATC-TGATATAATTGTA 77060 |||| || | |||| | ||||||| || || ||| || ||| ||||| Sbjct 141424 TGATTTCTTTAGGAATAGCCTCAATATTTTGTATAGATCCATTATTATGA-ATAATGAGG 141366 Query 77061 TTCTTTATATCATCATTCCACAATT-TCCTCTCTGTTAAAACTCTAAGGAGATGAGGATT 77119 || || || || |||| |||||| | | || ||||||||| | | | | |||| |||| Sbjct 141365 TTTTTCATGTCTTCATCCCACAAATCTGCT-TCTGTTAAATCCCGCAACAAATGATGATT 141307 Query 77120 AACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTC 77179 || | ||||||||||||||||| ||||| | |||||||||| || | || || Sbjct 141306 TACCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTC 141247 Query 77180 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAA 77239 | ||||||||||| || | ||||||||||| ||||||||||||||||| || | | Sbjct 141246 AAATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAG 141187 Query 77240 TAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT-CCAATCCCAAA 77298 | ||| | || |||||| | ||||| || |||| ||| || ||||||||||| Sbjct 141186 AAGTGAATTGCGCAGTCCATGTTTGGCAATTTTTTCCTTTA-ATACTTGCCAATCCCAAA 141128 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 |||||| || | ||| | || || |||| || || | |||| || | Sbjct 141127 GATCTGTGGGAGTTTTGTTCCACATCTCATACTGTAATATACCTTGACTAACAGGACTAC 141068 Query 77359 CATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC 77418 | | ||| |||||||| || | | |||| || | ||| ||||| ||||| || || | Sbjct 141067 CTTCATAAGTTTCATATACACCATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCAC 141008 Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC--TTGTGCTTCAATACTATCAAA 77476 | |||||||| ||||| || || | | ||| || | | | ||| | | ||| | Sbjct 141007 CATAATAAATAGTTTCAAATATTTGTTGATTCAGTTTAATAGCACTTTCGT--TTTCATA 140950 Query 77477 CGGATAATGTAAAAGAATA--AAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 ||| ||| | |||| || | || ||||| ||||| || ||||| ||||||||| Sbjct 140949 AGGA--ATGCGCATCAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGT 140892 Query 77535 CTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATT 77594 ||||||||| |||| || | || |||||||| | |||||| | || | || |||||| Sbjct 140891 CTATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATT 140832 Query 77595 TTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 ||||| || || | || | |||| ||| ||||| || |||| ||||| || || Sbjct 140831 TTATTCAGGTTCTGAGTGACAATTTTAGTCACTTCCTTAAGCTTAATAAAATTGTATGTT 140772 Query 77655 C---CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711 |||| | |||||||| || || || || ||||| | ||| || |||||| ||| Sbjct 140771 TTATCATCATTCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCA 140712 Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | || | || | | || || ||||| | || || || || || ||||||| | Sbjct 140711 TCTGCAGATGTGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAA 140652 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 |||| || || |||||| |||| || | |||||||| || ||| | || || || ||| Sbjct 140651 TTTTTCTGATTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTT 140592 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTAT 77891 |||| |||| || ||||||| |||||| | | | |||||| | | | || || Sbjct 140591 TCAACTTGTGCCTCTATAATAGCTTTCCATAGTATTTGAGCTTTAAC--TTGCTTGACAT 140534 Query 77892 CGCCTCTCTCTT--TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCAT 77949 | | | || | ||||||| ||| || |||||||| || |||||| || Sbjct 140533 AACGTTTTTCCTGTTCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAGTCTG 140474 Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 | | |||||| | |||| |||||||| | |||||| ||| || || ||| |||| Sbjct 140473 CTAGTCCAGGAGAATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTT 140414 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 ||||||| | ||| || ||||| | |||| || || |||| | ||| ||| || | Sbjct 140413 TCATAAATAAATCTGGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTGACTTCCTCTT 140354 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 | || ||||||||| | ||| | ||| || | ||||| | |||||| || |||| | Sbjct 140353 TGCCATGATTCTTTTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGT 140294 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | | || | |||| ||||||||||| || || ||||| | ||||||||| ||||| | Sbjct 140293 AGACAGCAAAGGCTCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGT 140234 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249 | ||||| | |||||| |||| || ||| || || |||||||||||||| |||||| Sbjct 140233 TGTAAACACGCAACATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGG 140174 Query 78250 TTCCACTTGCGCGAAT--ATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307 | || |||| | ||| | | | ||| | | || || || || || ||| || || Sbjct 140173 TGCCTTTTGCTCTAATGCAATGCACATGAACA--CCAATACCACCAGCTGACTTTGAAAT 140116 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367 | || || | || || || || || || ||||| || |||||||| |||| || Sbjct 140115 CAATGCACATTGCTTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAAC 140056 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 |||||||||| ||||| ||| | ||| | ||| ||| | || ||| ||| Sbjct 140055 AAGAAAACAGGAAGACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGC 139996 Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCA 78487 || ||||| |||||||||| | || ||||||||| | ||||| | || || || Sbjct 139995 GTGGGTAAAATATTTTTCAGATAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTC 139936 Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAAC 78538 ||| ||||| | | ||| | ||| ||||||||||| ||||| ||||| Sbjct 139935 ACCATGTATTCCAATAGATACTCTCATTAACATATGCTGTGGTCTCTCAAC 139885 >seq142 Length=7807734 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||| | ||| |||||||| |||||||||||||||| || ||||| || ||||| ||| Sbjct 5993895 TTTGACAAATCCACTTCTTCCACTGTCCAAAATGATGCTTCCGCTTTCTTGTACATTTTC 5993836 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 ||||||||| || || |||||||| || ||||||| ||||||| Sbjct 5993835 CATATATCAGGATACTGAATTGGGAATATTACAAATCGTCTTGGATT 5993789 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 |||||||| || || | |||||| || || || || || || || ||| |||| ||||| Sbjct 5994340 TACATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGCTTCA 5994281 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || | || |||||| | || | ||| | | ||| ||||| ||||||||||| Sbjct 5994280 GTCACTTGGACCTCCTGTGAGAACCTTTCTACAAGATTTTCATTGACTATTCCATCTGAT 5994221 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAAT 48585 ||||| || ||||| || ||||| |||||||||| Sbjct 5994220 GCAGCGAAGAATGCCAAAACATGCTTAATAAAAT 5994187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694601564743520