Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2594 571 8e-158 seq142 105 1e-17 >seq2594 Length=7326867 Score = 571 bits (632), Expect = 8e-158 Identities = 1212/1791 (68%), Gaps = 30/1791 (2%) Strand=Plus/Minus Query 75362 TTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTAC 75421 ||| ||||||| | || ||||| || | | || || ||||| ||||||| ||| ||| Sbjct 141662 TTACTCTTATCTACAGTAAACTGGATAGCATTGGCAGCAGGTTTAGTACGTAAATAATAC 141603 Query 75422 ATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAA 75481 || ||||| || | ||||| ||||| | || ||||| || || | |||| ||| Sbjct 141602 ATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAATGTATAGACGTCAATTTGCCGTAA 141543 Query 75482 CTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCA 75541 | || | || | ||| ||||| | ||||| || ||||| || || ||||||||||| Sbjct 141542 TTAGGGGCAGCCACATGTATATTGAATGACTGGCTCTGATCTATAAATGCTCCTCTATCT 141483 Query 75542 GCCGCCATTTTTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTT 75599 || ||||||| ||| | || ||||| | ||| ||||| | |||||| | | | Sbjct 141482 GCGGCCATTTGAATAGTTGT--TTTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCC 141425 Query 75600 TGATATCATCTGGAAGA---TTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTAT 75656 |||| || | |||| | | ||||||| || ||||| || | ||||| | Sbjct 141424 TGATTTCTTTAGGAATAGCCTCAATATTTTGTATAGATCCATTATTATGAATAATGAGGT 141365 Query 75657 TCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAA 75716 | || || || |||| |||||| | | || |||||| | | | | |||| |||| | Sbjct 141364 TTTTCATGTCTTCATCCCACAAATCTGCTTCTGTTAAATCCCGCAACAAATGATGATTTA 141305 Query 75717 CAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCA 75776 | | ||||||||||||||||| ||||| || |||||||||| || | || || | Sbjct 141304 CCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAA 141245 Query 75777 CAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATA 75836 ||||||||||| || | ||||||||||| |||||||| |||||||| || | | | Sbjct 141244 ATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAA 141185 Query 75837 AACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT-CCAATCCCAAAGA 75895 ||| | || |||||| | ||||| || |||| ||| || ||||||||||||| Sbjct 141184 GTGAATTGCGCAGTCCATGTTTGGCAATTTTTTCCTTTA-ATACTTGCCAATCCCAAAGA 141126 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 |||| || | ||| | || || |||| || || | ||| || || Sbjct 141125 TCTGTGGGAGTTTTGTTCCACATCTCATACTGTAATATACCTTGACTAACAGGACTACCT 141066 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | ||| ||||| || || | ||||| || | ||||||||| || ||||| ||||| Sbjct 141065 TCATAAGTTTCATATACACCATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCA 141006 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TTGCGCTTCAAGACTATCAAAAG 76073 |||||||| ||||| || || | | ||| || | | || ||| | ||| ||| Sbjct 141005 TAATAAATAGTTTCAAATATTTGTTGATTCAGTTTAATAGCACTTTCGT--TTTCATAAG 140948 Query 76074 GATAATGTAAAAGAATA--AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCT 76131 || ||| | |||| |||| || |||| ||||| || ||||| ||||||||||| Sbjct 140947 GA--ATGCGCATCAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCT 140890 Query 76132 ATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTT 76191 ||||||| |||| || | | |||||||| | || ||| | || | ||| |||||||| Sbjct 140889 ATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTT 140830 Query 76192 ATTGAGATTTCTGACA-ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTC 76250 ||| || || |||| || | |||| ||| ||||| || || | ||||| || || Sbjct 140829 ATTCAGGTT-CTGAGTGACAATTTTAGTCACTTCCTTAAGCTTAATAAAATTGTATGTTT 140771 Query 76251 ---CATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 |||| ||||||||||||| | || || ||||| | ||| || || ||| |||| Sbjct 140770 TATCATCATTCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCAT 140711 Query 76308 TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGAT 76367 ||| | || | | || || || || | || || ||||| || || || | || Sbjct 140710 CTGCAGATGTGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAAT 140651 Query 76368 TTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTT 76427 ||| || || |||||| | ||||| | |||||||| || | | | || || ||||||| Sbjct 140650 TTTTCTGATTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTT 140591 Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTAT- 76486 ||| |||| || ||||||| |||||| | | | |||||| | | | || || Sbjct 140590 CAACTTGTGCCTCTATAATAGCTTTCCATAGTATTTGAGCTTTAACTT--GCTTGACATA 140533 Query 76487 -CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATC 76545 || || || |||||||| | ||| | |||||||| || |||||| || | Sbjct 140532 ACGTTTTTCCTGTTCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAGTCTGC 140473 Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 | |||||| | |||| || ||||| | ||| || ||| || || ||| ||||| Sbjct 140472 TAGTCCAGGAGAATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTT 140413 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 |||||| | ||| || ||||| | |||| || || |||| | ||| ||| || || Sbjct 140412 CATAAATAAATCTGGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTGACTTCCTCTTT 140353 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 || ||||||||| | ||| | || || | ||||| | |||||| || |||| || Sbjct 140352 GCCATGATTCTTTTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTA 140293 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 | || | | || ||||||||||| || || ||||| | ||||||||||||||| || Sbjct 140292 GACAGCAAAGGCTCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTT 140233 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 ||||| | |||||| |||| || || || || ||||||||||||| |||||| | Sbjct 140232 GTAAACACGCAACATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGT 140173 Query 76846 TCCACATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 || ||| | ||| | | | || || | || || || || || || || || Sbjct 140172 GCCTTTTGCTCTAATGCAATGCACAT-GA-ACACCAATACCACCAGCTGACTTTGAAATC 140115 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 | ||||| | || || |||||||| || ||||| || || ||||| |||| || | Sbjct 140114 AATGCACATTGCTTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACA 140055 Query 76964 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCA 77023 ||||||||| ||||| ||| | ||| | ||| ||| | || ||| ||| Sbjct 140054 AGAAAACAGGAAGACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCG 139995 Query 77024 TGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCAT 77083 || || || |||||||||| | || ||||||||| | ||| | || || ||||| Sbjct 139994 TGGGTAAAATATTTTTCAGATAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTCA 139935 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 ||| ||||| | || || | ||| ||||||||||| |||| || ||| Sbjct 139934 CCATGTATTCCAATAGATACTCTCATTAACATATGCTGTGGTCTCTCAACA 139884 >seq142 Length=7807734 Score = 105 bits (116), Expect = 1e-17 Identities = 125/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||| ||||| | ||||| ||||| || || || || || ||| |||| |||||| Sbjct 5994340 TACATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGCTTCA 5994281 Query 46981 GTAATCTGTACCTC-TGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCAC 47038 || | || ||||| ||| | || | ||| |||| ||| ||||| ||||||||||| Sbjct 5994280 GTCACTTGGACCTCCTGTG-AGAACCTTTCT-ACAAGATTTTCATTGACTATTCCATCTG 5994223 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 47082 ||||| || |||||||| ||||| |||||||||| ||||| Sbjct 5994222 ATGCAGCGAAGAATGCCAAAACATGCTTAATAAAATGCCTTTCA 5994179 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 ||||| | ||| |||||||| ||||||| ||||| || || ||||| || ||||| ||| Sbjct 5993895 TTTGACAAATCCACTTCTTCCACTGTCCAAAATGATGCTTCCGCTTTCTTGTACATTTTC 5993836 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||||||||| |||| || || || || || ||||||| ||||||| Sbjct 5993835 CATATATCAGGATACTGAATTGGGAATATTACAAATCGTCTTGGATT 5993789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712865396861760