Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5264 152 1e-31 >seq5264 Length=5978571 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || ||||||||||| ||||||||||| |||| || || | |||||| Sbjct 3329034 AGTACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCT 3328975 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| | | ||||||||| | | || ||||| || ||| Sbjct 3328974 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 3328915 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| || ||| |||||| | |||||||| ||||||||||| || || ||| Sbjct 3328914 TGGATCTTTGCCTTCACATTCTCTATGGTGTCTGAAGGTTCTACTTCAAGGGTGATGGTT 3328855 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| ||||| |||| |||||| Sbjct 3328854 TTTCCAGTGAGAGTTTTCACAAAGATCTGCAT 3328823 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || ||||||||||| ||||||||||| |||| || || | |||||| Sbjct 3328578 AGTACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCT 3328519 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| | | ||||||||| | | || ||||| || ||| Sbjct 3328518 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 3328459 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| || ||| |||||| | |||||||| ||||||||||| || || ||| Sbjct 3328458 TGGATCTTTGCCTTCACATTCTCTATGGTGTCTGAAGGTTCTACTTCAAGGGTGATGGTT 3328399 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || ||||| |||| |||||| Sbjct 3328398 TTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 3328367 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||||||||| || |||||||| || || | || || | |||||||| || Sbjct 3329254 ATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGACAAGGTACGGCCATCTTCAAGTTG 3329195 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||||||||| | | ||||||||| | | |||||| || || || || ||||| Sbjct 3329194 TTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGATTTT 3329135 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | || ||| | |||| | | || ||| || |||||||| || || ||||| || || Sbjct 3329134 TGCCTTCACATTTTCTATGGTATCAGAAGGTTCCACTTCAAGGGTGATTGTTTTTCCAGT 3329075 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 || || |||||||||| ||||||| Sbjct 3329074 AAGGGTTTTCACGAAGATCTGCATT 3329050 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || ||||||||||| ||||| || || || ||||||| | ||| | ||||||||| Sbjct 3786395 ACTAGGTGAAGAGTAGATTCTTTCTGAATATTATAATCGGAAAGAGTGCGTCCATCTTCT 3786336 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | |||||| || || || || |||||||| || | | ||| || ||||| |||||| Sbjct 3786335 AATTGTTTCCCAGCAAAAATGAGTCTCTGCTGATCAGGAGGGATACCCTCCTTATCTTGA 3786276 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | |||||| ||| ||||| | |||||||||||| Sbjct 3786275 ATTTTGGCTTTAACATTTTCAATAGTATCTGAAGGCTCCACTTCTAAAGTAATAGTTTTT 3786216 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || |||||||| || || | |||||| Sbjct 3786215 CCAGTCAGAGTCTTAACAAAAATTTGCATT 3786186 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||||||||| || ||||||||||| |||| || || | |||||| Sbjct 3329718 AGAACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCT 3329659 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || || || | || ||||||||| | | || |||||||| || Sbjct 3329658 TCCAATTGTTTACCAGCAAAAATCAACCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 3329599 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||| ||| ||| ||||| |||||||| || Sbjct 3329598 TGGATCTTCGCCTTCACATTTTCAATGGTGTCAGAAGGCTCAACTTCCAGAGTAATGGTC 3329539 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| | ||||| Sbjct 3329538 TTACCAGTAAGGGTTTTCACGAAAATTTGCAT 3329507 Score = 122 bits (134), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||| || |||||||||| ||| || | |||||||| | Sbjct 3783429 CAAG-TGAAGTGTAGATTCCTTTTGAATATTGTAATCGGATAATGTGCGTCCATCTTCCA 3783371 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | || ||| ||||| | | ||| || || || ||||| | Sbjct 3783370 ACTGCTTGCCAGCGAAGATCAACCGCTGTTGGTCTGGGGGGATGCCCTCTTTATCTTGGA 3783311 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | | || || |||||||| | || || ||||| | Sbjct 3783310 TCTTGGCTTTTACATTCTCAATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTTC 3783251 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 |||| | |||||||||||||| ||||||||| || Sbjct 3783250 CCGTCAAAGTCTTCACGAAGATCTGCATTTTGCC 3783217 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| ||||| || || || || || || || || | | ||| | |||||||| Sbjct 3328803 ACAAGATGGAGAGTGGATTCCTTCTGAATATTATAGTCCGAGAGAGTGCGTCCATCTTCC 3328744 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || ||||| || || ||||||||||| | | |||||| || || || || Sbjct 3328743 AGTTGTTTACCAGCGAAAATCAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGG 3328684 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 |||||| || ||| | |||| | | || ||| || || ||||| || || ||||| Sbjct 3328683 ATTTTTGCCTTCACATTTTCTATGGTATCAGAAGGTTCCACCTCAAGGGTGATTGTTTTT 3328624 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || |||||||||| ||||||| Sbjct 3328623 CCAGTAAGGGTTTTCACGAAGATCTGCATT 3328594 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || | ||| | || || ||||||||||||||||| || | | ||| | Sbjct 3330181 GAGTCGGAGTACCAAATGCAAGGTGGATTCTTTTTGGATGTTGTAGTCTGAAAGAGTACG 3330122 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| || || || ||||| ||||| || || | | ||| || || Sbjct 3330121 TCCATCTTCCAGCTGTTTACCAGCAAAAATAAGTCTCTGTTGATCTGGAGGGATGCCCTC 3330062 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||||||| ||||||| | || | |||| || || || || | ||| Sbjct 3330061 CTTGTCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGATGGTTCGACCTCCAAAGT 3330002 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||||| || || || || || || || | |||||| Sbjct 3330001 AATGGTTTTACCAGTCAGGGTTTTAACAAATATCTGCAT 3329963 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| ||||| || || |||||||||| || || | |||||||| | Sbjct 3783657 CAAG-TGAAGTGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCATCTTCCA 3783599 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || | ||||||||| | | ||| || ||||| ||||||| Sbjct 3783598 ACTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAA 3783539 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | ||||||| |||||||||||| ||||| ||||| | Sbjct 3783538 TTTTAGCCTTCACATTTTCGATAGTGTCTGATGGCTCTACTTCAAGGGTAATTGTTTTTC 3783479 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || || |||| ||||| Sbjct 3783478 CAGTCAAGGTTTTAACAAAGATTTGCAT 3783451 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || || || |||||||| | | |||| |||||||||| Sbjct 3785253 CAAG-TGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCATCTTCTA 3785195 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || ||||| | ||||||||| | | ||| ||||| || ||||| | Sbjct 3785194 ACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGGA 3785135 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | ||||||| ||| ||||| || || |||||||||| Sbjct 3785134 TTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCAACTTCTAGTGTTATAGTTTTGC 3785075 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| ||||| Sbjct 3785074 CAGTCAATGTCTTGACGAAGATTTGCAT 3785047 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || || || |||||||| | | |||| |||||||||| Sbjct 3785709 CAAG-TGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCATCTTCTA 3785651 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || ||||| | ||||||||| | | ||| ||||| || ||||| | Sbjct 3785650 ACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGGA 3785591 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | ||||||| ||| ||||| || || |||||||||| Sbjct 3785590 TTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCAACTTCTAGTGTTATAGTTTTGC 3785531 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| ||||| Sbjct 3785530 CAGTCAATGTCTTGACGAAGATTTGCAT 3785503 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || || || |||||||| | | |||| |||||||||| Sbjct 3783885 CAAG-TGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCATCTTCTA 3783827 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || ||||| | ||||||||| | | ||| ||||| || ||||| | Sbjct 3783826 ACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGGATGCCTTCTTTGTCTTGGA 3783767 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | | ||||| ||| ||||| || || |||||||||| Sbjct 3783766 TTTTAGCCTTAACATTTTCGATAGTATCTGATGGCTCAACTTCTAGTGTTATAGTTTTGC 3783707 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| ||||| Sbjct 3783706 CAGTCAATGTCTTGACGAAGATTTGCAT 3783679 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || || ||||| |||||||| || | || || | ||||||||||| Sbjct 3786162 ATGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAGTGTGCGTCCATCTTCTAGCTG 3786103 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || |||||||||||||| | | || ||||| || ||||||||||| Sbjct 3786102 TTTACCTGCGAATATTAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGAATTTT 3786043 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| | || | | || || ||| || || | || ||||||||||| || Sbjct 3786042 AGCCTTCACATTTTCAATAGTATCCGAGGGCTCCACCTCTAATGTGATAGTTTTGCCGGT 3785983 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| | ||||| Sbjct 3785982 CAATGTCTTGACGAAAATTTGCAT 3785959 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| ||||| || || |||||||||| || || | |||||||| | Sbjct 3785025 CAAG-TGAAGTGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCATCTTCCA 3784967 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || ||||| || | | || ||||| | | || ||||| || ||||| | Sbjct 3784966 ATTGCTTACCAGCGAAAATCAATCGTTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGGA 3784907 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || || | |||| | | || || ||| || ||||| || |||||||||| Sbjct 3784906 TTTTAGCCTTTACGTTTTCTATGGTATCAGAGGGCTCAACCTCAAGTGTGATAGTTTTGC 3784847 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || || | |||||| Sbjct 3784846 CAGTCAAGGTCTTGACAAAAATCTGCAT 3784819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153706332683553