Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2594 111 1e-19 seq5264 109 5e-19 seq601 82.4 7e-11 >seq2594 Length=7326867 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| |||| ||| ||||||||||| |||||||| || | ||||| | || Sbjct 5011885 AACACCAAGTGCAAGGTGGATTCCTTCTGAATATTATAGTCTGACAAAGTGCGGCCATCT 5011944 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | ||| |||||||| || ||||| ||||| ||||| | |||| | ||||| ||| Sbjct 5011945 TCCAACTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTATCC 5012004 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| |||| ||| | | ||||||| | || ||||| | || || || Sbjct 5012005 -TGAATTTTGGCTTTAACATTTTCGATAGTGTCGGAAGCTTCGACCTCAAGGGTGATGGT 5012063 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| |||||||| |||||||| Sbjct 5012064 CTTCCCTGTTAGCGTTTTTACGAAGATCTGCAT 5012096 >seq5264 Length=5978571 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| || || || ||||| ||||| |||||||| || Sbjct 3328366 GCCACCACGGAGACGCAATACCAAGTGTAGAGTCGATTCCTTTTGAATATTATAGTCAGA 3328307 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || | |||||| || || || ||||| ||||| || || | ||| Sbjct 3328306 AAGTGTGCGACCGTCTTCCAACTGCTTTCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 3328247 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813 || || || ||||| |||||| |||| ||| || | | ||| | || | Sbjct 3328246 AATGCCTTCTTTGTCTTGGATTTTG-GCTTTTACGTTTTCAATGGTATCGGAAGGTTCTA 3328188 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || || ||||||||||||| ||||| || ||||||||||| || Sbjct 3328187 CTTCCAAAGTAATGGTTTTACCCGTCAATGTCTTAACAAAAATCTGCATTTT 3328136 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || || ||||| || ||| ||||||||||| |||||||| || Sbjct 3328822 GCCACCACGGAGACGCAAAACAAGATGGAGAGTGGATTCCTTCTGAATATTATAGTCCGA 3328763 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || || || || || ||||| ||||| | ||| ||||| | ||| Sbjct 3328762 GAGAGTGCGTCCATCTTCCAGTTGTTTACCAGCGAAAATCAGTCTCTGCTGGTCTGGGGG 3328703 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||||||| ||||| | || || | ||||| Sbjct 3328702 GATTCCCTCTTTGTCCTGGATTTTTGCCTTCACATTTTCTATGGTATCAGAAGGTTCCAC 3328643 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || ||||| || || || || || ||||| |||||||| Sbjct 3328642 CTCAAGGGTGATTGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 3328595 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| ||| || || ||||||||| ||||||||||| || Sbjct 3329277 CCACCACGGAGACGCAAAACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAC 3329218 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || || || || |||||||| |||| ||||| ||||| | ||| Sbjct 3329217 AAGGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 3329158 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||| |||||| ||||||| ||||| | || || | ||||| Sbjct 3329157 ATTCCCTCTTTGTCCTGGATTTTTGCCTTCACATTTTCTATGGTATCAGAAGGTTCCACT 3329098 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || || || ||||| |||||||| Sbjct 3329097 TCAAGGGTGATTGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 3329051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||||||||||| || || || ||||| ||||| || || ||||| Sbjct 3783450 GCCACCTCGGAGACGTAACACCAAGTGAAGTGTAGATTCCTTTTGAATATTGTAATCGGA 3783391 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | ||||||||| ||||| |||| ||||||||||| | ||| Sbjct 3783390 TAATGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAACCGCTGTTGGTCTGGGGG 3783331 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCA 41813 | || ||| || | | || | || |||| || | | || || | || | Sbjct 3783330 GATGCCCTCTTTAT-CTTGGATCTTGGCTTTTACATTCTCAATTGTATCAGATGGTTCTA 3783272 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || || ||||| ||||||| ||||| ||||| |||||||| || Sbjct 3783271 CTTCCAAGGTGATGGTTTTTCCCGTCAAAGTCTTCACGAAGATCTGCATTTT 3783220 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| || |||| |||||| || |||||||| || || || || || || ||||| | Sbjct 3784806 ACGCAAAACCAAATGCAGTGTTGATTCCTTCTGGATATTGTAATCAGAAAGTGTGCGTCC 3784747 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || | ||||||||| || || |||| || || ||||| | || | || || || Sbjct 3784746 ATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATGCCTTCTTT 3784687 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTA 41825 ||| ||| || |||| || || ||| || | ||| ||||||| ||| | Sbjct 3784686 GTCTTGGATCTTA-GCTTTTACATTCTCAATAGTATCAGATGGCTCGACCTCCAACGTAA 3784628 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||||||| |||| || || || ||||||||||| Sbjct 3784627 TAGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 3784591 >seq601 Length=1759178 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || || ||| ||||||||| ||||| ||||| || Sbjct 654010 CCACCACGGAGCCGCAGCACCAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAT 653951 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 41733 || ||||| | || |||||||||||||||||||| || Sbjct 653950 AGCGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGAT 653913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462259254751600