Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq236 199 4e-46 seq637 147 2e-30 seq895 82.4 8e-11 >seq236 Length=545527 Score = 199 bits (220), Expect = 4e-46 Identities = 154/183 (84%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 63557 TTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63616 ||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836 Query 63617 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63676 ||| ||||| || |||||||| || || || |||||||||||||| |||||||| || || Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776 Query 63677 CTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 || ||| || || ||| ||||| | ||||| ||||| ||||| ||||| |||||||| Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716 Query 63737 TTC 63739 ||| Sbjct 30715 TTC 30713 >seq637 Length=122170 Score = 147 bits (162), Expect = 2e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 63569 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 63628 ||| || ||||| | ||||||||| |||||||||| |||||| |||||||| || || Sbjct 107118 AGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTAC 107177 Query 63629 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 63688 ||| || || |||||||||||||||||||| |||||||| || ||||| | | ||||| Sbjct 107178 TGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATC 107237 Query 63689 TTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63742 ||| ||||| | || ||||| ||||||||||| ||||||||||| || Sbjct 107238 GAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291 >seq895 Length=39754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 63570 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 63629 ||||| || || | || || || ||||||| || | ||||| | ||||| || || Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939 Query 63630 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63689 ||||| || || || ||||||||||| | ||| || || || |||||| || ||||| Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999 Query 63690 TCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63742 || | || | || ||||||||||||||||| || || || ||||| Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540349482391120