Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq960 98.7 3e-16 seq1001 82.4 2e-11 >seq960 Length=33163 Score = 98.7 bits (108), Expect = 3e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16270 TACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTGT 16329 |||||||| | |||||||| || || || |||| | | | ||||| ||||||| | Sbjct 13079 TACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGA-T 13137 Query 16330 CTG-TGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 16388 || | || ||||| || | ||| || ||| | ||| | | || || || | Sbjct 13138 CTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCA 13197 Query 16389 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 16448 ||||| || |||| |||||| |||||||||||||||||||||| | ||| | || || Sbjct 13198 GGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGG 13257 Query 16449 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAA 16481 | |||||||| ||||||||| | ||||| || Sbjct 13258 CAAGGGCGGCACCGAGCCGCGCTTTACCTGCAA 13290 >seq1001 Length=29257 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20710 AGGATGCGGACACAACGAGAAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGT 20769 |||| ||| ||| || |||||| || || |||||||| || |||||| ||||||||| Sbjct 4788 AGGACGCGACCACGGCGCAAAAGGGTATCGTCCAGCTCAGTAGCGCAACCGACAGCACGT 4847 Query 20770 CTGAAACGCTTGCTGCAACGCCAAAGGCGGTTAAG 20804 |||| ||||| || || ||||| || ||||| ||| Sbjct 4848 CTGAGACGCTCGCAGCGACGCCGAAAGCGGTAAAG 4882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155081496112192