Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq486 345 5e-90 seq65 102 1e-16 >seq486 Length=217039 Score = 345 bits (382), Expect = 5e-90 Identities = 1048/1608 (65%), Gaps = 26/1608 (2%) Strand=Plus/Plus Query 52797 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 ||||||| | |||||||| || | | || || || ||||||| ||| ||||||| Sbjct 174754 CCTTGTCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTC 174813 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || || | || | |||| | || ||||| || ||| | ||| ||| | | Sbjct 174814 CAGTCTTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTG 174873 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | ||||||| |||||| || | |||||||| || || ||||| || || | || || | Sbjct 174874 GTTCTGCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGG 174933 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 53035 |||||| || | ||||| | || ||||| | ||| || |||| || |||| | Sbjct 174934 CCATTTGGATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTATT- 174992 Query 53036 TCTTCTGGAAGGTTTGTATT---CTGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092 |||| |||| || | | |||||| |||||| | ||||| ||| || Sbjct 174993 TCTTTGGGAATACTTTCAATAGACTGAATGGATCCATTGTTGTGTATAATGAGATTTTTC 175052 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || ||||||| |||||| | |||||| | | | | ||| || || | || || || Sbjct 175053 ATATCATCATCCCATAAATCAGCCTCGGTGAGATCGCGAAGCAGGTGATGGTTGACCACC 175112 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || ||||||||||| | ||||| | |||||| || || | || || | || Sbjct 175113 TGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGAT 175172 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 ||||| || || | ||| || ||||| || || || ||||| || |||| ||| | | Sbjct 175173 TCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAG 175232 Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 || | || || | | | ||| || | || |||| ||| | ||| || || | Sbjct 175233 TTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTGTG 175292 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 53391 ||| ||| | || || | |||||| | || | || |||| Sbjct 175293 GGTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCCGGACAA-CCAGCATA 175351 Query 53392 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 53451 || || || || || || || |||||||| || || ||||| || || ||||| Sbjct 175352 CGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATA 175411 Query 53452 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 |||||||| || || | | ||| || | || ||| | || || | ||| Sbjct 175412 GATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAGGAAGGCG 175471 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | | | ||| || || || | ||||| || ||||| |||||||||| || ||| | Sbjct 175472 CATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCAT 175531 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 ||||| ||| |||||||| | ||||| ||||||| ||| ||||| || || ||||| Sbjct 175532 GTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTT 175591 Query 53632 TCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA--- 53687 || | || | |||| ||| | || ||||| ||||||| || | || | Sbjct 175592 -CTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATTTTCGG 175650 Query 53688 TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||||||||||||| | ||||| || |||| || ||||| ||||| |||| |||| | Sbjct 175651 TTACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATG 175710 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | | ||||| ||||| ||||| || || ||||||||||| ||||| | ||||| Sbjct 175711 TGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGAT 175770 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | |||||| |||| || ||||| || ||||| ||| |||| || ||||| || | || | Sbjct 175771 TGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTG 175830 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGC-----CTTTATTATAGATTTGTATCTCTT 53922 || ||||| || ||||| | || |||| |||| ||| | | | || Sbjct 175831 CCTCAATAATAGCCTTCCATAGGATTTGAGCGCGGACTTTTTTA-ACA----AACCTACC 175885 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 |||| ||| ||| ||| ||| ||||| || ||||||||| || |||| || Sbjct 175886 TTCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCCCCAACAATCAGCCAAGCC 175945 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| | || | || ||||| | |||||| ||| | || || | ||||| || Sbjct 175946 AGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGAA 176005 Query 54043 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 ||||| | ||||| ||||| ||| || || |||| | | |||||| || || | Sbjct 176006 TAGATCTGAGATCCACAGAGC-ATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCG 176064 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 | ||||| || | || |||||| | | || |||| |||||||| || | ||| | || Sbjct 176065 TGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGG 176124 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | || ||||| ||||| || ||||| || | ||| | || ||||| || || | Sbjct 176125 CGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACA 176184 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | | || ||| || | | || ||||| | || || || || | ||| ||| | || Sbjct 176185 CGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTT 176244 Query 54282 TGGCACGAATATTACTAA-TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | || | || | || ||| | ||||| || || || ||| || |||||||| Sbjct 176245 TCGCTCTGATGCAATGAACATGA-ACTCCTATGCCGCCCGCGGATTTGGATATTAATGCA 176303 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 || | || | || || ||||| || || || || || ||| ||||| Sbjct 176304 CACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATG 176351 >seq65 Length=1244346 Score = 102 bits (112), Expect = 1e-16 Identities = 158/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || ||||| ||| || || ||||||||||| || || | ||||| Sbjct 631695 CCTCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTT 631636 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 ||||||| || ||||| || || ||||| ||||| || || || |||||||| || | Sbjct 631635 TAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATG 631576 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 24331 | | | |||||| || | | || ||| || ||||||| ||||| || Sbjct 631575 CTACTATTCTTTCACC--GAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTC 631518 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 |||||||| |||||||| || | ||||| | |||||| || || Sbjct 631517 AGCCTTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAG 631473 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 |||||||| ||||| | || || ||||| ||||| ||||||||||| |||||||| || Sbjct 630964 TACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCTTCA 630905 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 || | || ||||| | || | ||| | | || ||||| || || || ||| Sbjct 630904 GTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCAGAA 630845 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579 || ||||| || ||||| |||||||| ||||||| Sbjct 630844 GCAGCAAAGAATGCCAAGACATGTTTGATAAAAT 630811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708285793120