Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq197 116 3e-21 seq1030 107 2e-18 seq176 105 6e-18 seq119 105 6e-18 >seq197 Length=620651 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || || ||||| ||||| | | Sbjct 449338 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 449397 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||| ||||||||| ||| | || | ||||||||||| ||| Sbjct 449398 AGGGTGCGGCCATCCTCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 449457 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| ||||| | | | || || || ||| | Sbjct 449458 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATTGTGTCTGAGGCTTCCACT 449517 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| |||||||| || | ||||| || || || ||||| Sbjct 449518 TCCAGGGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449564 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | |||| || | ||| ||||| || || || |||||||| | | Sbjct 446706 CCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGAC 446765 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || |||| || || ||||| || || | ||||||| ||||||||| || Sbjct 446766 AATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGG 446825 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | ||| || || | || | Sbjct 446826 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACT 446885 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| |||| ||||| || || || ||||| Sbjct 446886 TCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| |||||||| ||||| | || ||| | | |||||||||||||| || Sbjct 447680 GTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCCAGCTGTTTACCA 447739 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||| ||||| || | ||| |||||||| |||||| ||| Sbjct 447740 GCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTC 447799 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | || ||||| ||| |||||||| || || | ||| Sbjct 447800 ACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGGTCTTTCCTGTCAGAGTT 447859 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 447860 TTGACGAAAATCTGCAT 447876 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || || |||||||| | || || || |||| || || ||||| || Sbjct 448893 GTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTGTTTACCG 448952 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||||| ||||||||| || | |||||||||||| |||||| ||| Sbjct 448953 GCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTC 449012 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | ||| ||||| || || |||||||| |||| ||| Sbjct 449013 ACATTCTCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTT 449072 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 449073 TTCACGAAAATCTGCAT 449089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| || | | || | ||| | || |||||||| || ||||| ||||| | Sbjct 448104 TTCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAG 448163 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||| || |||| || ||||| || || || | || || | |||||||||| | Sbjct 448164 ATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAG 448223 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||| || || | ||| || || | || Sbjct 448224 GAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGA 448283 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| ||||||||||| || | ||||| || || || ||||| Sbjct 448284 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 >seq1030 Length=27445 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || |||| ||||| | ||||| || | || || ||||| || ||||| ||||| Sbjct 2671 TTACCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCG 2730 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | |||||| || | |||||||||||||| || || | || |||| |||||||||| | Sbjct 2731 GACAGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGG 2790 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | || |||||||| |||||| ||| || | ||| || || | |||| Sbjct 2791 GGGATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCC 2850 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || | || || || || || ||||| ||| Sbjct 2851 ACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATTG 2904 >seq176 Length=676275 Score = 105 bits (116), Expect = 6e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 |||||||| || ||||||||| ||||| ||||||| | | ||||||| ||||||||| Sbjct 84379 GGCGGCGTCGGTCTGAACCTGTGCGGCGCCAACCACCTGCTGCTGCTGGACCCGCACTGG 84320 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAG 38839 |||||||| | |||| ||||||||| ||||| || ||||| |||| ||| Sbjct 84319 AACCCGCAGCTGGAGCAGCAGGCGCAGGACCGTATATACCGCGTGGGGCAG 84269 >seq119 Length=877449 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 23808 CACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCG 23867 ||| ||||||| ||| ||||| || || | ||| || |||||||||||| |||| | Sbjct 424401 CACATTGCCCAAGTCCCCGACATGGCGGACGGCGTCGCTGGGCGCGCCGTGCGTCTGCTG 424342 Query 23868 GGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTG 23927 ||||| |||||| |||| ||||| |||||||||||| || |||| ||||| ||||| Sbjct 424341 CAGCGGGTTGAAGTGCGCGCCGGCGGAGGTGCAGCCGTTGGTGTTGTCCCCGAACTCGTG 424282 Query 23928 CACGTGAAAACCGTGC 23943 | ||| || |||||| Sbjct 424281 GATGTGGAAGCCGTGC 424266 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 ||||||| |||||| | | || |||| | ||||| ||||||||||||||| ||| Sbjct 425299 CCAATGACCCCGCAGGCGATGCGAGCGCCCGCGTTGCCGGTGGTCTTGCTGAGCTCGTGG 425240 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCA 23728 |||| ||| ||||| ||| |||||| |||||| ||||| ||||||||| Sbjct 425239 CCGCCCGCGCCGAGGTCGTCGGGGTCCGCGTGCACCACCAGCGTGCGGCCCA 425188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249967566504