Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq1547 1626 0.0 seq997 477 3e-130 >seq1547 Length=4346 Score = 1626 bits (1802), Expect = 0.0 Identities = 1531/1939 (79%), Gaps = 15/1939 (1%) Strand=Plus/Minus Query 15640 AAACGACGTCTGGTTATGAGCGCAGCCACCGTATCGATTTACCGCAGGCTGGCAGCACAT 15699 |||| || ||||||||||| |||||||||||||| |||||||| ||||| |||||||| | Sbjct 4346 AAACCACCTCTGGTTATGAACGCAGCCACCGTATTGATTTACCTCAGGCGGGCAGCACCT 4287 Query 15700 GGACAATACGTCTGCGTAAGATTACCTCTGACGCCAACAGCGCGAAGATCGGCGACACGA 15759 |||| || | ||||| || ||||| | || ||||| ||||||||||| |||||||||| Sbjct 4286 GGACCATCAGGCTGCGCAAAATTACAGCCGATGCCAATAGCGCGAAGATTGGCGACACGA 4227 Query 15760 TGATGCTGCAGAGCTTCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGC 15819 ||| |||||| ||||||||||| || || || |||||||| ||||| ||||||||||||| Sbjct 4226 TGACGCTGCAAAGCTTCACCGAAGTAATCGACGCCAAACTTCGCTATCCGAACACCGCGC 4167 Query 15820 TGCTCTACGTCGAATTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCG 15879 | || ||| ||||||| || || ||||||||||| ||||| ||||| |||||||| |||| Sbjct 4166 TACTGTACATCGAATTTGATTCGAGCCAGTTCAATGGCTCAATTCCGCAAATTTCCTGCG 4107 Query 15880 AACCGCGCGGCCGCGTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATA 15939 | || ||||| || ||||| || || || |||||||| ||||| ||||| || || || | Sbjct 4106 AGCCTCGCGGACGTGTTATTCGTGTGCCCGATACCTATGACCCGGAAACACGAACGTACA 4047 Query 15940 GCGGTACATGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTT 15999 |||| || ||||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct 4046 GCGGCACCTGGACGGGCGCATTTAAGTGGGCATGGACGGATAACCCTGCGTGGATATTTT 3987 Query 16000 ACGACCTGGTTGTTTCTGACCGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAATATTG 16059 |||| ||||| || ||||||| ||||||||||| | || | || || || || || | Sbjct 3986 ACGATCTGGTGGTCACTGACCGCTTCGGCCTTGGTAATCGGCTAACGGCAGCCAACATCG 3927 Query 16060 ATAAATGGACGCTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAG 16119 | |||||||| ||||||||||| ||||| ||||||||||| |||||| || || || | Sbjct 3926 ACAAATGGACTCTTTATCAGGTCGCTCAATATTGTGATCAATCGGTACCGGATGGTAAGG 3867 Query 16120 GGGGCAACGGTACAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACG 16179 | |||| ||| || ||||||||||| ||||||||||| |||||||| || || || |||| Sbjct 3866 GCGGCAGCGGAACTGAACCACGTTACACCTGCAACGTATACATTCAAGATCGAAATGACG 3807 Query 16180 CCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGG 16239 | ||||| |||||||| ||||||||||| || || || ||||||||||||||||| | | Sbjct 3806 CTTACACCGTCCTGCGAGATTTTGCCGCCATTTTTCGAGGCATGACCTACTGGGGAGACG 3747 Query 16240 ATCAGATTGTGGCCCTGGCTGACATGCCGCGCGATGTTGATTACAGCTATACGCGCGCTA 16299 | |||||||| ||||| || |||||||| | ||||| |||| | ||| |||| ||||| Sbjct 3746 ACCAGATTGTTGCCCTTGCAGACATGCCCAGAGATGTCGATTTTACCTACACGCACGCTA 3687 Query 16300 ACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAG 16359 |||| || | ||| || ||||| || ||||| || ||||| |||||||| | | Sbjct 3686 ACGTAGTCGACGGCAAATTTGTGTATTCCAGTAGCACAACTAAAAGTCGCTACACAAACG 3627 Query 16360 CGCTGGTTTCATGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAACCGGTATTTG 16419 | || || || ||||| || |||| || | ||||| || || ||||| || || || | Sbjct 3626 CTCTTGTATCCTGGTCTGATCCGGCAAATGGCTATGCTGATGCAATGGAGCCAGTCTTCG 3567 Query 16420 AGCAGGCGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCA 16479 | |||| |||||||||||| || || ||||| ||||| || || || |||||||| |||| Sbjct 3566 AACAGGAGCTGGTGGCGCGCTATGGTTTCAACCAGCTCGAGATCACCGCCATCGGTTGCA 3507 Query 16480 CCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATC 16539 || ||||||| ||||| ||| | || ||||||||||| || || ||||| || || ||| Sbjct 3506 CCCGGCAGTCTGAGGCTAACAGGAAAGGGCGCTGGGGGATCCTGACCAACAATAAAGATA 3447 Query 16540 GCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCG 16599 | |||| ||||||| || || |||||||| || ||||| |||||||||||||| || | Sbjct 3446 GGATTGTAACGTTTGACGTTGGTCTGGACGGTAATATTCCTCAGCCGGGCTACATAATTG 3387 Query 16600 CCGTGGCAGA-CGAGCTGCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAAC 16658 | || | || ||| | ||||| |||| | | | ||||| || | ||| ||||| Sbjct 3386 CTGTTTCTGATCGAAAT-CTTTCAGGAAGAGATTTAGGCGGTCGATTATCCGCGGTTAAT 3328 Query 16659 GGTCGCGTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTC 16718 || || ||| ||||||||||||| ||| | ||| | ||||| | | || | Sbjct 3327 GGGCGTGTTCTCAAACTTGACCGGGTACCAAGTGCTAAGGCCGGTGACAGGATAATGGTA 3268 Query 16719 AACCTGCCTTCCGGAGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAATCAGTC 16778 |||||||| || || | || | | || |||||| || || ||| ||| ||| Sbjct 3267 AACCTGCCATCGGGTATCACTCAATCCCGAACGATTCAGTCCCTGTCCGGTGAAATGGTC 3208 Query 16779 ACAGTCACCACGGCATACAGTGAGACGCCACAGGCCGAAGCTGTTTGGGTGGTTGAATCT 16838 || || ||||| || | || ||| ||||||||||| ||||| ||||| |||||||| Sbjct 3207 ACCGTGACCACCGCTTTTAGCGAGCTTCCACAGGCCGAGGCTGTATGGGTTATTGAATCT 3148 Query 16839 GACGAGCTTTACGCGCAGCAGTATCGTGTTGTCAGCGTTTCCGATAACAATGATGGCACT 16898 || || || || ||||||||||| | || | || || ||||||||||||| || ||| Sbjct 3147 GATGAACTCTATGCGCAGCAGTACAGGGTAATTAGTGTCACCGATAACAATGACGGGACT 3088 Query 16899 TTCTCGATTACCGGCGCATGGCACGACCCGGATAAATATGCCCGTATCGATACCGGAGCC 16958 | | || || || ||| ||||| |||||||||| | || || |||||||||||| Sbjct 3087 TATACCATCACGGGGGCAAATCACGATCCGGATAAATTCGATCGCATTGATACCGGAGCC 3028 Query 16959 ATCATTGACCAACGGCCGGTGAGCGTGATCCCGCCGGGCAACCAGTCGCCGCCTGCGAAT 17018 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3027 ATGATTGACCAGCGGCCGGTGAGCGTGATCCCGCCGGGCAACCAGTCGCCGCCTGCAAAC 2968 Query 17019 ATCGTGATCAGCTCGTTTTCCGTGGTTCAGCAAAATATCAGCGTCGAAACAATGCGCGTG 17078 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 2967 ATCGTGATCAGCTCGTTTTCCGTGGTGCAGCAAAATATCAGCGTCGAAACGATGCGCGTG 2908 Query 17079 AGCTGGGACCAGGCGCAGAACGCTATCGCCTATGAAGCGCAATGGCGCCGCAACGACGGG 17138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2907 AGCTGGGACCAGGCGCAGAACGCTATCGCCTATGAAGCGCAATGGCGCCGCAACGAGGGG 2848 Query 17139 AACTGGGTTAACGTGCCGCGCACCTCCACCACGTCATTCGACGTCCCGGGGATTTATGCC 17198 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || Sbjct 2847 AACTGGGTTAACGTGCCGCGCAGCTCCACCACGTCATTCGACGTTACGGGGATTTATTCC 2788 Query 17199 GGGCGCTACCTGGTGCGGGTGCGCGCAATCAATGCCGCAGAAATTTCATCCGGATGGGGC 17258 ||||| ||||||||||| ||||| || ||||| || || |||||||| ||||||||||| Sbjct 2787 GGGCGGTACCTGGTGCGCGTGCGTGCTATCAACGCAGCGGAAATTTCTTCCGGATGGGGA 2728 Query 17259 TATTCAGAAGAGAAAACGCTGACGGGTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTT 17318 |||||||||||||| ||| |||| || ||||||||||||||||| ||||| || || || Sbjct 2727 TATTCAGAAGAGAAGACGTTGACCGGCAAAGTGGGCAATCCACCTAAGCCAGTAGGATTC 2668 Query 17319 ATCGCCTCTG--AAAACGTGGTGTTCGGTATCGAGCTGAACTGGGGATTCCCGGCGAATA 17376 | |||| | | | | ||| || || || |||||||| |||||||| || | Sbjct 2667 ACCGCCACGGGCATTAACTGG-----GGGATTCGTCTTAACTGGGGTTTCCCGGCAAACA 2613 Query 17377 CCGACGACACGCTGAAGACGGAAATTCAGTACA-GCCTGACCGGTACTGAAGACGATGCC 17435 ||| ||| ||||| || |||||||||||||||| | || | ||| | ||| || Sbjct 2612 CCGGCGATACGCTAAAAACGGAAATTCAGTACACAGCAAACAGTGACTTTTCA-GAT-CC 2555 Query 17436 ATGC-TGCTGGCCGATGTGCCTTA-CCCGCAGCGCAAATATCAGCAGATGGGCCTTAAGG 17493 || | |||| | || |||||||| || | ||| |||| ||| | |||||||| | Sbjct 2554 ATTCTTGCTCTCAGACGTGCCTTATCCATCTGCG-GAATACACCCAGCTCGGCCTTAAAG 2496 Query 17494 CTGGGCAGATTTTCTGGTACCGCGCGCAGCTGGTTGACCGCAGCGGTAACGAGTCAGGTT 17553 | |||||| |||||||||||||| ||||| || ||| | | ||||||||||| || | Sbjct 2495 CAGGGCAGGAATTCTGGTACCGCGCACAGCTTGTCGACAGAACGGGTAACGAGTCCGGGT 2436 Query 17554 ATACCGGCTGGGTTCGTGG 17572 |||||| |||| | || || Sbjct 2435 ATACCGACTGGATCCGGGG 2417 >seq997 Length=29618 Score = 477 bits (528), Expect = 3e-130 Identities = 577/785 (74%), Gaps = 3/785 (0%) Strand=Plus/Minus Query 12014 AAGCAACATTCATCCAGGCATTTAAACCATGAGCTTAAACGCAGACTATCAGAAGCTTGA 12073 ||||||| |||| ||||||| ||||||| | | | ||| ||||| || || Sbjct 785 AAGCAACCTTCAAACAGGCATACGCACCATGA---TTACTGAAGATTATCAACGCCTCGA 729 Query 12074 ATCCGGAAACGATGTTCGTCTGATTGAGGTGGACGGTTCTTCCTTTGGGCTAACGGACGT 12133 | | || || | | ||||| ||||||| ||||||||| | ||||| || ||||| Sbjct 728 ACCGGGTAAAAAAATACGTCTTCTTGAGGTAGACGGTTCTGCGTTTGGTCTGGACGACGT 669 Query 12134 TCTCCGCTTTCACAATTACAGCATTCCCCACACGGAAGCGGAAATCATCGCCGCTGGTGG 12193 ||| ||||||||| ||| | | | || || || | || || || || |||||||| Sbjct 668 TCTGCGCTTTCACGCTTATAACCTCCCGCATACTGCAGAAGAGATTGCGGCTGCTGGTGG 609 Query 12194 TGATGAGTCCAAGCTACCGGCGAAACCAATCTGGTGGCAGGGAAATGAATACGCCGCCTG 12253 || || || ||| || |||||| |||||||||||||| | || || | ||||| Sbjct 608 CGACGAATCAAAGTTAAAGGCGAAGAGTATCTGGTGGCAGGGCGAAGAGTATGGTGCCTG 549 Query 12254 GCCGTATCAGCTGGAAGGCCTGGAAAAATCAACCAGTGGGAGCAATGCAACGCCATCACT 12313 ||| ||| |||| || || |||||| ||| || ||| || | || ||| | || Sbjct 548 GCCATATAAGCTCGAGGGACTGGAAGCGTCATCCGATGGCAGTAGCGCCCAGCCGACGCT 489 Query 12314 GACGGTTGCGAACATCGAAAGCTCTATTTCTGCCATGTGTCTTGCGTATGACGATCTGCT 12373 || ||||| ||||| || |||||||| |||| | ||||| || ||||||||| |||| Sbjct 488 CACCGTTGCCAACATTGACAGCTCTATCACTGCGCTCTGTCTGGCCTATGACGATATGCT 429 Query 12374 GCAGGCGAAAGTCACTATTCACGACACAAAAGAGAAATATCTCGATGCCAGAAATTTCGC 12433 |||||| ||||| || ||||| ||||| | | | || || ||||| | |||||| | Sbjct 428 GCAGGCCAAAGTTACGATTCATGACACTTTTGCGCATTACCTGGATGCGCGCAATTTCCC 369 Query 12434 GGACGGCAACCCCACAGCAGACCCGACTCAGGAAAAGCTGCAGGTCTGGTATATCGACGG 12493 ||| || || || |||||||| || |||| | || ||| | ||||||||||| Sbjct 368 GGATGGAAATCCAACAGCAGATCCCTTGCAGGTGAGAAAGCGGGTTTTCTATATCGACGG 309 Query 12494 GAAAACTGGCGAGCTTGCCGGTGAAACCGTTGAATTTGTTCTGTCCAGCCCGATGGACCT 12553 |||| | |||||||| ||||||||| | || |||||||| | ||||||||||| || Sbjct 308 TAAAAATAGCGAGCTTCCCGGTGAAAGTATCGAGTTTGTTCTTACAAGCCCGATGGATCT 249 Query 12554 GCAGGGGCAAATGATCCCGACGCGACAGCTTCATTCCCTGTGTACCTGGTGCATCCGGAA 12613 |||||| ||||| ||||| ||||| | |||||||| || || |||||||||||||| Sbjct 248 GCAGGGATTGATGATTCCGACCAGACAGTTGCATTCCCTTTGCACATGGTGCATCCGGAA 189 Query 12614 TAAATATCGTACCGGCGACGGCTGCGACTATGCCGGCATCCGCTATTTCGATAAAAACAA 12673 || || || |||||||| || ||||| |||||||||| | || ||||| | |||||| Sbjct 188 TAGGTACCGCACCGGCGATGGGTGCGATTATGCCGGCACGCTTTACTTCGACAGAAACAA 129 Query 12674 CAACCCGGTAAGCGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACT 12733 ||| |||||||||||||| || ||||||||||||| |||||||| || |||||||| || Sbjct 128 CAATCCGGTAAGCGATCCCTCATTGGATGAATGCAACGGCACGCTCACCGCCTGCAAGCT 69 Query 12734 CCGATTCGGCGAAAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGATCAG 12793 || || || ||| | || ||||| | || ||||| || || || || ||||||||||| Sbjct 68 TCGGTTTGGTGAACACAATGAACTTCCTTTCGGTGGTTTTCCAGGAACATCTTTGATCAG 9 Query 12794 GAGTT 12798 ||||| Sbjct 8 GAGTT 4 Score = 156 bits (172), Expect = 1e-33 Identities = 313/469 (67%), Gaps = 24/469 (5%) Strand=Plus/Minus Query 37025 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 37084 |||||| || | |||||||| |||| |||| | ||||||||| | | || | || | Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195 Query 37085 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGACAAAGCC 37144 ||||| |||| || || || || ||||||||| ||||||||||||||||||| |||||| Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135 Query 37145 GCAT---------------------CCATCATCGCTGACATGCAGAAGCGTCAACGTGAT 37183 | ||| |||| |||||||||| || || |||||| Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075 Query 37184 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 37243 | || | || || |||| |||||| || | |||||||| || | | || || Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015 Query 37244 AGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCCTGCAAGTCTCTGCCACCTGT--- 37300 |||| | | ||||| |||||| |||||||| ||||| || || | |||| Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955 Query 37301 GCAAAGTCAACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGTCCAAGACTTACAGCA 37360 || || | ||||||| || || |||||||||||| | || |||||||| | Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 37361 GATGCTGAACTCAATTATTACCGTCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTT 37420 ||||||| |||||| | ||| ||| |||||| || | || |||||| Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 37421 AACTACCTGCAGGAGTACATCAGGACTCAGTGCCTGAAATAAttttttt 37469 ||| |||||| | ||||| || ||||||||| | |||||| ||||| Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127018093980632