Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq986 820 0.0 seq997 156 1e-33 seq1102 95.1 3e-15 >seq986 Length=30461 Score = 820 bits (908), Expect = 0.0 Identities = 982/1331 (74%), Gaps = 2/1331 (0%) Strand=Plus/Plus Query 19735 TTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATAT 19794 |||| |||||| | ||| |||||| ||| |||| || ||||| || ||||| || Sbjct 11744 TTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAATGTAC 11803 Query 19795 TCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGA 19854 ||||| || | ||| || || || | ||| || ||||| |||||||| | || ||||| Sbjct 11804 TCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGACAAGT 11863 Query 19855 AGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCA 19914 | ||||| |||||| | ||| ||| ||||| | | || | |||||||||||| Sbjct 11864 AATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCATGCG 11923 Query 19915 CCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGA 19974 || || || |||| | |||||||| || | || || || ||||| ||||| || || Sbjct 11924 CCATAGAGAAATGCGAGACCTGCAACAACAAGCCCGATATAGGTCCACATGCGCAGAGGG 11983 Query 19975 AATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAAT 20034 || || |||||| || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 11984 AAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCATTAAAT 12043 Query 20035 TTCGAATCACCGGCCACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCA 20094 || | | || || |||||||| || |||||||||| |||||||||||| || ||| Sbjct 12044 TTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGACCACCA 12103 Query 20095 ACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCG 20154 ||||| || || || |||||||| || | ||| | |||||||| | |||||||| ||| Sbjct 12104 ACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGTTTTCG 12163 Query 20155 ACAACCGCACGGCTCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTG 20214 || ||| ||||| ||| | || || || || |||||||| ||||| | || || ||| Sbjct 12164 ACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGTTACTG 12223 Query 20215 ATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTT 20274 ||||| ||||||| |||||| |||||||| || | ||||| |||| || | ||||| Sbjct 12224 ATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTATCAGTG 12283 Query 20275 GAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGA 20334 |||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 12284 GAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTATCAGA 12343 Query 20335 TGAGGGATAACTTCTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCG 20394 || || || || || || || ||||| || || || ||||| || || | || || || Sbjct 12344 TGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTTCACCT 12403 Query 20395 GTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAA 20454 || || ||||| || || ||||| | |||||| ||||| || ||||| || || || ||| Sbjct 12404 GTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGAAGGAA 12463 Query 20455 AGCGGAATAACGAGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCT 20514 || |||| || |||||||| | ||| | ||| || |||||||| ||||||||| Sbjct 12464 AGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCGCATCT 12523 Query 20515 TTACTACCATCATTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCA 20574 || ||||| ||||| || || || ||||||| ||| | | |||| | | | |||||| Sbjct 12524 TTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAAACTCC 12583 Query 20575 CGTACCGTTTTATAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGA 20634 || || | ||| ||||| || || || | || ||||| ||||| || |||||||| ||| Sbjct 12584 CGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGACCAGA 12643 Query 20635 GAGATTTTCATCTTATATCCCTGAAAACAATGAATCTGGAATAGATAAAGCCGCATACCA 20694 || |||||||| | |||||| || |||||||| | |||||||| |||||||| |||| Sbjct 12644 GAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCACACCA 12703 Query 20695 GGCTAATTGCCGAGAAAGTGATAAGGGTAATCAATGGTGGCAAG-GAACATTGGTCAGCC 20753 | || || || |||||| ||| | ||||| ||| | |||||| ||| |||||| Sbjct 12704 GACTGATGGCGGAGAAAACGATTAACGTAAT-AATCGGGGCAAGCCCTGATTTGTCAGCA 12762 Query 20754 ATCCAGCCAACAACAGCGCTCAGTGTTCCCATGAATCCCACATACATCATGTAGCGAAGC 20813 ||| ||||| | |||||||| || ||||| || || ||||||| ||||||||| | Sbjct 12763 CACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCGCATG 12822 Query 20814 GTGGTGGTGGTGGCATTAAAGGTGAAACGCGCATTGGCATAGAAGCTGAACGATACGGCG 20873 || || || | | ||||||||||| | || || || | ||||| || || || || Sbjct 12823 GTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACACCGCA 12882 Query 20874 ATAACAAAACCGGAAAAGTTCGCCAGCGCCTGATGCGTATGCATCCCATACACACAAAAA 20933 | ||||| |||| ||||| ||||| || || || || | | || | | ||| Sbjct 12883 ACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGAAATG 12942 Query 20934 GCAAATACGCCCCAATGAATAAGCGTGTTAAGAACACCGATCGATGTGTACTTAGCGAAT 20993 || || || |||| ||||| |||||||| | |||||| || ||||||||| | |||||| Sbjct 12943 GCGAACACAACCCAGTGAATGAGCGTGTTGATAACACCTATTGATGTGTACCTGGCGAAT 13002 Query 20994 AACTTCAACATTATGAAAATCAGCGGATTCGGAAAGGTCTGAAGTGTAGCACTACAAATT 21053 ||||| |||||||| ||||||| | ||||||||||||||||||||||||| ||| || Sbjct 13003 AACTTTAACATTATAGAAATCAGTGAATTCGGAAAGGTCTGAAGTGTAGCATCACACATG 13062 Query 21054 GTTTTGATCGA 21064 |||||||| Sbjct 13063 CACTTGATCGA 13073 >seq997 Length=29618 Score = 156 bits (172), Expect = 1e-33 Identities = 297/439 (68%), Gaps = 25/439 (6%) Strand=Plus/Minus Query 39011 TGCGTCTGTCATTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGA 39070 |||| ||||| |||||||| | | |||| | | | ||||| |||| || ||||| || Sbjct 18230 TGCG-CTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATTAACCACTATCGCGA 18172 Query 39071 TAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACA-------TCA---------- 39113 |||||||||||||||||||||||||||||||||||||| ||| Sbjct 18171 CAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAACTCAGCCAGGCCAA 18112 Query 39114 ----ATCATCGCTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATA 39169 | |||| || ||||||| || || || |||| || | || ||||||| ||| Sbjct 18111 CGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGCTGGATGCCAAATA 18052 Query 39170 CACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAACTCTCCGCGCTGATGTTTCTGC 39229 ||| || | |||||||| || | | || || ||| | ||||| ||| Sbjct 18051 CACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCATAGCGATGTCATTGC 17992 Query 39230 TGGGCGTAAGCGCCTGCAAGTCTCCGCCACCTGTCCA---AAGTCAACGACCGGAGCCAG 39286 ||| |||||||| ||||| || ||| | |||||| || | ||||||| || | Sbjct 17991 TGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGAGCGACCGGCACCGG 17932 Query 39287 CGGCATGGGCGATGGAGAAAGCCCAAGACTTACAGCAGATGCTGAACTCAATTATTACCG 39346 |||||||||||||| |||| |||||||| | ||||||| |||||| | Sbjct 17931 CGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAACGGGATTATTTCAT 17872 Query 39347 TCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTTAACTACCTGCAGGAGTACATCAG 39406 ||| ||| |||||| || | || |||||| ||| |||||| | ||||| || Sbjct 17871 CCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTGCAGAACTACATAAG 17812 Query 39407 GAGTCAGTGCTTAAAATAA 39425 | |||||||||||||||| Sbjct 17811 CACTCAGTGCTTAAAATAA 17793 Score = 140 bits (154), Expect = 9e-29 Identities = 184/252 (73%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 40727 TTTCTTGTGGTTGAAAAGT--GGCACTCACCGACAAGCAAGAAATGTTCTGTCATGAGTA 40784 ||| || ||| ||||| | ||| ||| ||||||| |||||||||||||| | ||||| Sbjct 16469 TTTTTTTTGGGGGAAAAATATGGCGCTCGCCGACAAACAAGAAATGTTCTGCCGCGAGTA 16410 Query 40785 CCTCATCGATTTAAACGCCACGCAAGCGGCGATTTGGGCGG---AGATATCTAAGATTGC 40841 ||| |||||| | ||||||||||||||||| ||| |||||| | | | |||| || Sbjct 16409 CCTAATCGATATTAACGCCACGCAAGCGGCTATTCGGGCGGGGCACAGCCCAAAGACAGC 16350 Query 40842 T-ATCACACTGCCCAAGAAAAAATGTCAAAACCTTACGTCCAGCCAAGGATTATTGTTCT 40900 | | | ||||| ||||| | ||||||||| || |||| | || ||| | || Sbjct 16349 TAACCGCACTGTGTCCGAAAACCTATCAAAACCTGACATCCAATCCAGAATTGCCGAACT 16290 Query 40901 GTAAACTTAAAGCAATGATCTGGTTGGTATAAATGTGACACATGTCATGAATCGACTAGT 40960 || | || |||||||||||| || ||||||| || | | ||| | ||||| || || Sbjct 16289 TAAAGCGCAACACAATGATCTGGTAGGCATAAATGCGATATACGTCCTAAATCGTCTTGT 16230 Query 40961 TGAGATAGTCCA 40972 |||||||| ||| Sbjct 16229 TGAGATAGACCA 16218 >seq1102 Length=22075 Score = 95.1 bits (104), Expect = 3e-15 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 21293 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAAATAC 21352 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 21353 TTACGTA 21359 ||| ||| Sbjct 2214 TTATGTA 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133392358182008