Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq197 125 5e-24 seq1030 122 6e-23 >seq197 Length=620651 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| | || |||||||| ||||||||||||||| Sbjct 449566 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 449625 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || ||| |||| || | ||||||||| ||||| ||||| |||||||||||| || Sbjct 449626 AAGGTG-CGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGG 449684 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||||| ||| | | | || | || | | ||||| Sbjct 449685 GATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGAC 449744 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || || || ||||| || |||||||| Sbjct 449745 CTCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCAT 449792 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| |||||||| ||||||||||| ||| Sbjct 446934 CCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 446993 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||||||||| || ||||| || || ||||||||||| || Sbjct 446994 AGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 447053 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||| || ||||| | || | || | ||||| | ||||| Sbjct 447054 ATGCCCTCCTTGTCCTGGATC-TTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCGAC 447112 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || ||||| || || || |||||||| Sbjct 447113 CTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || || || | ||| ||||||||| ||||||||||||||| Sbjct 447162 CCTCCTCGCAGACGCAAAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAC 447221 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || ||| |||| || | |||||||||||| || || | || ||||||||| ||| Sbjct 447222 AAGGTG-CGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 447280 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||| ||||| ||| || ||||| | || | || | || | | ||| | Sbjct 447281 AATTCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAA 447339 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| ||||| || || |||||||| || |||||||| Sbjct 447340 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 447388 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||| ||| | ||| || ||||| |||||||||||||| Sbjct 447878 CCTCCGCGCAGACGCAGTACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 447937 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||| || ||||| || || ||||||||||| ||| Sbjct 447938 AGGGTGCGGCCATCTTCTAGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGGGG 447997 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| || | || | || | | ||| || Sbjct 447998 ATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACT 448057 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || ||||| ||||| || |||||||| Sbjct 448058 TCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 448104 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || || || | ||| || ||||| ||||||||||||||| Sbjct 447650 CCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 447709 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || || | || |||| ||| || || ||||| ||||| ||||| |||||| || Sbjct 447710 AAGGTG-CGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGG 447768 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | || | || | | ||| || Sbjct 447769 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAAC 447828 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || |||||||| || || |||||||| Sbjct 447829 TTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCAT 447876 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| | || |||||||| ||||||||||| ||| Sbjct 449338 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 449397 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||| |||||||| || || | || ||||||||| ||| Sbjct 449398 AGGGTGCGGCCATCCTCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 449457 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| ||||| ||| | || | || | || | | ||| || Sbjct 449458 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATTGTGTCTGAGGCTTCCACT 449517 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||| || || |||||||| || |||||||| Sbjct 449518 TCCAGGGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449564 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGA-CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||| || || || ||| |||| || | |||||| || ||||| Sbjct 448142 TCCTTCTGGATGTTGTAGTCAGATAAGGTG-CGGCCGTCTTCTAGCTGCTTACCAGCGAA 448200 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| || | || |||||||| ||||| ||||| || Sbjct 448201 GATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATT 448260 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | |||||| |||| |||||||| ||||| || || |||||||| Sbjct 448261 CTCGATGGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 448320 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 448321 GAAAATCTGCAT 448332 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || || || ||||||||||||||| || || || | || |||| ||| || || ||||| Sbjct 446286 TCCTTTTGGATGTTGTAGTCGGACAAGGTG-CGACCATCCTCCAGCTGTTTACCGGCGAA 446344 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| ||| | | ||||||||| ||||| ||||| || Sbjct 446345 GATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTTACATT 446404 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || |||| |||||||| || || || ||||| ||||| Sbjct 446405 CTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCAC 446464 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 446465 GAAAATCTGCAT 446476 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGA-CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||| || || || ||| |||| || | |||||| || ||||| Sbjct 446514 TCCTTCTGGATGTTGTAGTCAGATAAGGTG-CGGCCGTCTTCTAGCTGCTTACCAGCGAA 446572 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| || | || |||||||| ||||| ||||| || Sbjct 446573 GATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATT 446632 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | |||||| || | |||||||| ||||| || || |||||||| Sbjct 446633 CTCGATGGTGTCTGAAGCTTCGACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 446692 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 446693 GAAAATCTGCAT 446704 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| |||||||| || || ||||| ||| Sbjct 446706 CCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGAC 446765 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| || | || || || ||||| || || |||||||||||| || Sbjct 446766 AATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGG 446825 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | ||| || Sbjct 446826 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACT 446885 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| || || |||||||| || |||||||| Sbjct 446886 TCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || |||||||| || || ||||| ||| Sbjct 448863 CCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGAC 448922 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| || | || || || ||||| || || |||||||||||| || Sbjct 448923 AATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGG 448982 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | ||| || Sbjct 448983 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCACT 449042 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| || || |||||||| || |||||||| Sbjct 449043 TCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AG 34224 || ||||| | || || || || | ||| || ||||| ||||||||||||||| || Sbjct 448366 CCACGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAG 448425 Query 34225 CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCAC 34284 || || | || || | ||| ||||| ||||| || | || ||||||||| ||| | Sbjct 448426 GTG-CGACCATCCTCTAGCTGGTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAAT 448484 Query 34285 GCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGT 34343 | ||| ||||| ||| || ||||| | || | || || | | ||| || | Sbjct 448485 TCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCAATGATGTCTGAAGCTTCAACTT 448543 Query 34344 CCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| |||||||| || || || ||||| || |||||||||||||| Sbjct 448544 CCAGAGTGATGGTCTTTCCCGTCAGAGTCTTGACAAAGATCTGCAT 448589 >seq1030 Length=27445 Score = 122 bits (134), Expect = 6e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||||| ||||| ||| | ||| ||| ||||| ||||||||||||||||| |||| Sbjct 2683 AGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGG 2742 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || |||| ||| || || ||||| || || ||||||||||| ||| | | |||| Sbjct 2743 CCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACCCTCC 2802 Query 34292 TTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350 ||||| ||| || ||||| | || | || | |||| | || || || | || Sbjct 2803 TTGTCCTGGATC-TTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAGGGT 2861 Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| ||||| || || || ||||| ||||||||||| Sbjct 2862 GATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCAT 2900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064936232640