Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_002703.1 Length=38347 Score E Sequences producing significant alignments: (Bits) Value seq1367 471 1e-128 >seq1367 Length=8089 Score = 471 bits (522), Expect = 1e-128 Identities = 431/544 (79%), Gaps = 0/544 (0%) Strand=Plus/Plus Query 34249 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 34308 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 6065 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 6124 Query 34309 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGCTACTTCTTAAGAT 34368 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 6125 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 6184 Query 34369 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 34428 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 6185 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 6244 Query 34429 TATGTATAAATATCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 34488 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 6245 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 6304 Query 34489 ATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 34548 || | | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 6305 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 6364 Query 34549 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGTAAGAATCTTACATTTATATCAGA 34608 |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 6365 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 6424 Query 34609 TGATTCTACAGTTACAAGTTTAACTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 34668 | ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 6425 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 6484 Query 34669 ATTATTATTGGAAAATATGCCACAGGTTATGCGTAGTGAGTTGAATGATTTACATGCTCA 34728 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| Sbjct 6485 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 6544 Query 34729 AACTGATTCAAACAAGAGCAATATTGAGCTTAAAGCAAATTTAGCTGATATGACGAGCTT 34788 |||||| ||||||||||||||||||||||||||||| ||| | | || ||| | ||| Sbjct 6545 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTGAACAACTT 6604 Query 34789 ACAA 34792 |||| Sbjct 6605 ACAA 6608 Score = 176 bits (194), Expect = 1e-39 Identities = 106/112 (95%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 35210 TTAAGTACAAATCAAAATGTCGCAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 35269 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 6666 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 6725 Query 35270 GCCAAAAATGCAATGGCAAAGGCTACCAAAGCACAAGCGAACAGTTTACCAC 35321 ||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 6726 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 6777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122586188398852