Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq197 136 3e-27 seq1030 129 5e-25 seq637 102 6e-17 >seq197 Length=620651 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 |||||||||||| || ||| |||||| || |||||||||||| || |||| | || Sbjct 446264 TAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATC 446323 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 ||||| ||||| |||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 446324 CTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 446383 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | || || ||| || | | | | ||||| | | || || |||| || || || Sbjct 446384 CTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGT 446443 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||||||||||||||| || || ||||| Sbjct 446444 CTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 446476 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| |||||||||||||||||||||| || ||| | || || Sbjct 447895 TACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCTTC 447954 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| || || ||||| |||| ||||| ||||| || || | ||||||||||||| Sbjct 447955 TAGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTG 448014 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | | ||||| | | || || |||| || || ||||| Sbjct 448015 GATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTT 448074 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||||||||| || || ||||| Sbjct 448075 TCCCGTCAGAGTCTTCACGAAAATCTGCAT 448104 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | ||||||||||| ||| ||| ||||| |||||||||||| | Sbjct 449566 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 449625 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| || || || || || ||||| || | ||||| |||||||| || Sbjct 449626 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGG 449685 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| |||||| || || |||||| | | | | |||| || ||| ||| Sbjct 449686 ATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACC 449745 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| || || || || || ||||| |||||||| || || ||||||||| Sbjct 449746 TCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCATGTTG 449796 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || |||| | || ||||| ||||| || ||||| Sbjct 447685 CTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAA 447744 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||||||||||||||| | ||||||||||| || || ||| || Sbjct 447745 GATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATT 447804 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | | || || |||| ||| || ||||| || |||||||| || || Sbjct 447805 CTCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGAC 447864 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 447865 GAAAATCTGCAT 447876 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || |||| | || || || || || |||||||| Sbjct 448398 CTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGGTTGCCGGCGAA 448457 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | ||||| ||||| || || || || Sbjct 448458 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATT 448517 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | | || || |||| || || ||||| |||||||||||||| || Sbjct 448518 CTCAATGATGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTGAC 448577 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 448578 AAAGATCTGCAT 448589 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||| || || ||| ||||| || || ||||| || | || |||| Sbjct 448878 AATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCT 448937 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| |||||||| || | ||||| ||||||||||| | || |||||||| Sbjct 448938 TCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 448997 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | |||| | | ||||| |||| || || ||| Sbjct 448998 TGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTC 449057 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || || ||||| || || ||||| Sbjct 449058 TTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||| || || ||| ||||| || || ||||| || | || |||| Sbjct 446721 AATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGACAATGTACGGCCGTCT 446780 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| |||||||| || | ||||| ||||||||||| | || |||||||| Sbjct 446781 TCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 446840 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | |||| | | || || |||| || || ||| Sbjct 446841 TGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATTGTC 446900 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || || ||||| || || ||||| Sbjct 446901 TTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | ||||||||| || ||| ||| ||||||||||||||||| | Sbjct 446934 CCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 446993 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| || || || ||||| |||| ||||| ||||| ||||| Sbjct 446994 AGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 447053 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||||| | | | | || | ||| ||| Sbjct 447054 ATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCGACC 447113 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || || || || |||||||| || || || ||||| Sbjct 447114 TCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||| ||||||||||| | | || | ||| |||| || || || || || |||| Sbjct 448141 CTCCTTCTGGATGTTGTAGTCAGATAAGGT-GCGGCCGTCTTCTAGCTGCTTACCAGCGA 448199 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | |||| ||||| ||||| ||||| | || |||||||| || || ||| || Sbjct 448200 AGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACAT 448259 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | | || || |||| ||| || |||||||| ||||| || |||| Sbjct 448260 TCTCGATGGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCA 448319 Query 45324 CAAAGATTTGCAT 45336 | || || ||||| Sbjct 448320 CGAAAATCTGCAT 448332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||| ||||||||||| | | || | ||| |||| || || || || || |||| Sbjct 446513 CTCCTTCTGGATGTTGTAGTCAGATAAGGT-GCGGCCGTCTTCTAGCTGCTTACCAGCGA 446571 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | |||| ||||| ||||| ||||| | || |||||||| || || ||| || Sbjct 446572 AGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACAT 446631 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | | || || || | ||| || |||||||| ||||| || |||| Sbjct 446632 TCTCGATGGTGTCTGAAGCTTCGACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCA 446691 Query 45324 CAAAGATTTGCAT 45336 | || || ||||| Sbjct 446692 CGAAAATCTGCAT 446704 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTC 45183 ||||||||||| || ||| || ||||| ||||||||||| | | || | |||| | || Sbjct 448606 AATACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGATAAGGT-GCGACCATC 448664 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 || || ||||| |||||||| ||||||| ||| ||||| || || | ||||| |||| Sbjct 448665 CTCTAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGT 448723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||| || || ||| ||||| || || ||||| || | || |||| Sbjct 447405 AATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCT 447464 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| |||||||| || | ||||| ||||||||||| | ||||||||||| Sbjct 447465 TCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 447523 >seq1030 Length=27445 Score = 129 bits (142), Expect = 5e-25 Identities = 173/240 (72%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| | || || |||||||| || || |||||||| |||||||||||| | Sbjct 2674 CCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2733 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || ||||| ||||| || ||||| |||| ||||| ||||| || || Sbjct 2734 AGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGG 2793 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || || || | | | |||| | |||||||| Sbjct 2794 ATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACC 2853 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCA---TGTTGCCTCAA 45346 || | ||| || ||||||||||| || |||||||| ||||| |||| |||||||| || Sbjct 2854 TCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATTGTTGCCTGAA 2913 >seq637 Length=122170 Score = 102 bits (112), Expect = 6e-17 Identities = 275/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 6380 TAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACCCCACTAAAC 6439 ||||| ||||| ||| ||||| || ||| |||| |||| ||||| || | ||| Sbjct 60373 TAGTCAACCACGCCCGGTTCCCAGGTACCTCTCACCATACCGGTCGCGGTACCGGTGAAC 60314 Query 6440 AGATTGTTGTTCGTGTAATTCGTC-ACACCCGACCACCCCCTGCCGTACATAGCCACCCC 6498 ||||||| ||||| ||| || |||| ||| || | ||| ||||| || | || Sbjct 60313 GGATTGTTACCGGTGTAGC-CGTGTACCCCCGTCCAGCCGCGGCCATACATGCCCGCACC 60255 Query 6499 CACCACCAACTTGCCA--CTGTTCACACTCTGGTTCAACAAACGCCTCAACGCAAAGT-C 6555 ||||| | ||||||| |||| | | || || | || || || ||||| | | | Sbjct 60254 GACCACGATCTTGCCAGGCTGTACGC-CT-TGCTGCAGCAGG-GCATCAACCCCGTTTTC 60198 Query 6556 TGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGTAGCCCAG 6615 ||||||||||| || | | ||| | || | || ||| | || |||| |||||| Sbjct 60197 CGTGGTGTAGTTGGTGTCTGGTCGCCATGCTGGCGCATGCAGCGCAGCCTGGTGGCCCAG 60138 Query 6616 ATCCGTCATCGACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAGTCGAGATA 6675 || || | ||| | || | | | |||||| |||||| ||| |||| |||||| || Sbjct 60137 CTCGGTGTTGCTCCAGCCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGTGGTCGAGGTA 60078 Query 6676 CTGTTG-GCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTGATGGCGC 6734 ||| || ||| || ||||||| || | || ||||| || | ||| | | ||| |||| Sbjct 60077 CTGCTGAGCAGTG-GTGTAGTCCACGTCTTCAATCTTATCTTTACCCGCACCGATTGCGC 60019 Query 6735 TCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACAT 6783 | |||| || | | ||||| |||| | |||||||| || ||| Sbjct 60018 TGGTCAGCTCATAGGTACGGCCAGTCTGGGCAGACAGCTCGTTCAGCAT 59970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066561927674