Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq1001 383 4e-102 >seq1001 Length=29257 Score = 383 bits (424), Expect = 4e-102 Identities = 1152/1772 (65%), Gaps = 95/1772 (5%) Strand=Plus/Plus Query 16979 TATCATCACGGTGTCCGGGTCCAAGAGATCAATGACGGGACCCGCCCCATTCGCACCATC 17038 ||||||||||| ||| |||| ||||| || || || || ||| ||||| |||| | Sbjct 6707 TATCATCACGGCGTCGAGGTCATCGAGATTAACGATGGCACGCGCACCATTTCCACCGTT 6766 Query 17039 GCCACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTCCA 17098 | || || ||||||||| |||| ||| ||| || || ||||| | | | |||| Sbjct 6767 TCGACGGCCATCATCGGCATGGTCTGCACGGCCAGCGATGCTGACGCAAA-GACATTCCC 6825 Query 17099 CTCGATACG--CCGGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCA 17156 || | ||| |||||||| || | || |||||| | || ||||| || || || | | Sbjct 6826 CTTAA-ACGAGCCGGTACTGATTAACAGCGTGCAAACGGCTATCGGTAAAGCCGGTAAAA 6884 Query 17157 GCGGTACGCTGCCCGCAAGCCTGCAAGCAATCGCCGACCAGGCCAACGCCGCCACTGTGG 17216 || |||||| | | |||||| || |||||||||||| ||| | | || ||||| Sbjct 6885 AAGGCACGCTGGCAAAATCCCTGCAGGCCATCGCCGACCAGTGCAAACCGGTCATTGTGG 6944 Query 17217 TGGTGCGGGT----GAAG-----------CCGGGCGAGGATGAAGCCGCG---------A 17252 ||||||| || |||| |||| || ||||| ||| | Sbjct 6945 TGGTGCGCGTTCCAGAAGGTGTCGACGACCCGGCAGACCCGGAAGCGGCGCAGAAAGAAA 7004 Query 17253 CCAATAGCGCGGTCATCGGCGGCGTCAG-CGCCGATGGCAAGTACACCGGCATGAAGGCC 17311 ||| | | |||||||| || | | || | ||||| |||||||| |||| || Sbjct 7005 CCATTTCCAACATCATCGGCA-CGACCGACGAAAACGGCAAATACACCGGGCTGAAAGCG 7063 Query 17312 TTGCTTGCCGCCAAGGCCCGCTTGGGCGTGGTACCGCGCATCCTCGGCGTGCCGGGCCTG 17371 || | | || || || | ||||| |||||||| |||||||||||||| ||| Sbjct 7064 CTGTTAACGGCGAAAACCGTCACCGGCGTTAAGCCGCGCATTCTCGGCGTGCCGGGGCTG 7123 Query 17372 GATACCCAGCCGGTCGCTACCGCACTCATCGCCATCGCCCAGCAACTGCGCGCCTTCGCT 17431 ||||| ||| || || ||||| || | | | |||| |||||||| |||| Sbjct 7124 GATACGCAGGAAGTGGCGACCGCGCTTGCGTCAACCTGCCAGAGCCTGCGCGCGTTCGGC 7183 Query 17432 TATGTCTCCGCCAGCGGCTGCAAGACAAAGGAAGAGGCCACCGCCTACCGCGAGAACTTC 17491 || || ||| | ||||||||||| | || |||| | ||||| ||||| ||| Sbjct 7184 TACGTAAGCGCGTGGGGCTGCAAGACCATTTCCGACGCCATCAAATACCGTGAGAATTTC 7243 Query 17492 GCCGCGCGCGAAGCCATGGTGATCTGGCCGGACTTCCTGACGTGGAGCACCGTGGTCAAC 17551 | |||||| ||||| || || ||||| ||| | ||| |||| || ||| Sbjct 7244 AGCCAGCGCGAGCTGATGGTCATTCACCCTGACTTTCTGGCATGGGACACCACGGCGAAC 7303 Query 17552 CAGACCG----TGCCTGCGCCAGCTGTTGCCCAGGCACTGGGCTTGCGTGCCCGGATCGA 17607 | |||| ||| || || | | |||| || || ||| |||| ||| ||||| Sbjct 7304 GAAACCGATATTGCATGGGCGACC----GCCCGCGCGCTCGGCCTGCGCGCCAAAATCGA 7359 Query 17608 TCAGGAGGTCGGTTGGCACAAGACCCTGTCGAACGTCGCCGTCAACGGCGTGACCGGCAT 17667 |||||| ||| |||||||| || ||||| ||||| | ||| || ||||| |||||| | Sbjct 7360 CCAGGAGACCGGATGGCACAAAACGCTGTCTAACGTTGGCGTGAATGGCGTCACCGGCGT 7419 Query 17668 CAGCGCCGACGTGTTCTGGGACCTGCAGAGCCCCAGC-ACCGACGCCAACTACCTCAACG 17726 ||||||| || | ||||| ||||| | | || |||||||||||| || || Sbjct 7420 CAGCGCCTCGGTCTCATGGGATTTGCAG-GAGCAGGCTACCGACGCCAACCTGCTGAATC 7478 Query 17727 AGAACGAGGTCACCACCCTGGTGCAGGAAGGGGGATTCCGTTTCTGGGGTTCGCGCACCT 17786 || || ||| || || || | | | | || || |||||||| || |||| Sbjct 7479 AGGCCGGGGTGACAACGCTAATCCGCAACGACGGCTTTAAGTTCTGGGGCAACCGTACCT 7538 Query 17787 GCAGCGATGATCCGCTGTTCGCCTTCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCG 17846 || || ||||| | |||| || || |||||||||||||| || ||||||||||||| Sbjct 7539 GCTCGGACGATCCTTTATTCGTGTTTGAAAACTACACCCGCACGGCGCAGGTGCTGGCCG 7598 Query 17847 ACACTATCGCCGAAGCGCACATGTGGGCGGTTGACAAGCCCATGCACCCGTCACTGGTGC 17906 |||| || || || |||||| ||||||| | ||||||||| | | | | || | | Sbjct 7599 ACACGATGGCGGAGGCGCACGCGTGGGCGATGGACAAGCCCGTTTCCGCAACGCTTATCC 7658 Query 17907 GCGACATCCTTGAGGGCGTGAACGCGAAGTTCCGCGAGCTCAAGGGGCTCGGTCTGATCA 17966 ||||||| | | || | || || || ||||||||||| || ||| ||| Sbjct 7659 GCGACATTGTCGCCGGTATCAATGCCAAATTCCGCGAGCTGAAAAATAACGGCTATATCG 7718 Query 17967 TCGAC-GCCCAGGCCTGGTACGACCCCAACGTGAACGACAAGGACACGCTCAAGGCCGGC 18025 | ||| | || | |||||||||||| | ||| | ||| || || || ||||| Sbjct 7719 TTGACGGGTCATG-CTGGTACGACCCGGAGTCAAACACCGTGGAAACCCTGAAAGCCGGG 7777 Query 18026 AAGCTGCGCATCACCTACGACTACACCCCGGTGCCGCCGCTCGAGGACCTGACCTTCTTC 18085 |||||| ||| |||||||||||||| || |||||||| || |||||||| | | Sbjct 7778 AAGCTGTATATCGATTACGACTACACCCCCGTCCCGCCGCTGGAAAACCTGACCCTGCGC 7837 Query 18086 CAGAAGATCACCGACAGCTATCTCGTCGACTTCGC-CAGCCGCGTCAACGCCTGACGCCC 18144 ||| |||||||| | |||||| | ||| | | || || |||||| || | Sbjct 7838 CAGCGCATCACCGATACCTATCTGGCTGACCTGTCAGAGTCG-GTCAACAGCTAA----- 7891 Query 18145 AGCGCTCCCCGGACGGGGAGCCGACCCACCTGATTCCCGGAGAGCCCTACCATGGCCATG 18204 ||||| || || | |||||| | Sbjct 7892 ----------------GGAGC-------------TC----AG------AACATGGCGTTA 7912 Query 18205 CCGCGCAAGCTCAAGAACATGAACCTCTTCAACGACGGCGGTAGCTACCAGGGCGTCGTG 18264 || ||||| || || || |||| | || ||||||||| |||||| ||||||||| Sbjct 7913 CCACGCAAACTGAAATACCTGAATATGTTTAACGACGGCCTCAGCTACATGGGCGTCGTT 7972 Query 18265 AAGTCCTGCACCCTGCCCCCGCTGGCCCGCAAGATGGAGGCCTTCCGCGGGGGCGGCATG 18324 | ||| ||||||||| |||| |||||||| | ||| | |||||| ||||| ||| Sbjct 7973 GAATCCGTCACCCTGCCAAAGCTGACCCGCAAGCTTGAGAAATACCGCGGCGGCGGGATG 8032 Query 18325 AACGGCCCGGTCAAGGCCGACCTAGGCTTCGACGATGACGGCATCCAGTTCGAGTGGACC 18384 ||| |||| | ||||| || ||||||| |||| | | | |||||||| Sbjct 8033 CCGGGCTCGGTGTCGATTGACCTCGGTCTCGACGACGACGCGCTGTCGCTTGAGTGGACG 8092 Query 18385 CTCGGCGGCCTGGATCTGAC----AGCCCT-CAAGCAGTACGGCGCAGTCAGTGCCAACG 18439 || ||||||||| ||||| ||| | |||||||| || ||||| || Sbjct 8093 CTGGGCGGCCTG--CCTGACGTCGAGCTGTGGGCGCAGTACGCGTCACCGGGTGCCGACA 8150 Query 18440 GCGTCATGCTGCGCTTCGCCGGCTCATTCCAGCAAGACGATACCGGCGAAGTCACGTCCG 18499 |||| |||||||||| ||||||| ||||||| ||||| ||||||| | | ||| Sbjct 8151 GCGTGCCGCTGCGCTTCACCGGCTCTTTCCAGCGCGACGACACCGGCGCTATTTCCGCCG 8210 Query 18500 TCGAAATCGTCGTTCGCGGCCGGCACGAGACCATCGAAATGGGTGACGCCCAGCCCGGCG 18559 | || | ||| | || ||||| ||| || ||| || || | | | |||| Sbjct 8211 TTGAGGTGGTCATGCGTGGCCGTCACAAGGAGTACGACGGCGGCGAAAACAAACAGGGCG 8270 Query 18560 AAGACACCGAGCACAAGATCACCACCACCTGCAGCTACTACAAGCTCGTCGTCAACGGCG 18619 || | | | ||| ||| | ||| ||| ||||| ||||| | ||||| Sbjct 8271 AAAGCGGCACGACCAAAATCTCGACCGAGTGCTCTTACTATCAGCTCACGATTGACGGCA 8330 Query 18620 AGGAAGTCATCGAGATCGACCTGCTGAACTTCGTCGAGAAGGTCAACGGCAAGGACCTGC 18679 |||| ||||||||||| ||| | | ||| | || ||| ||| ||||| |||| | Sbjct 8331 AGGAGGTCATCGAGATTGACGTCGTCAACATGGTGATGAAAGTCGACGGCGTCGACCGTC 8390 Query 18680 TCGAGGCACAGCGCAAGGCCATCGGCCTGTAA 18711 ||| | || ||| ||| || ||||||||| Sbjct 8391 TCGCTGAGCACCGCCGGGCGATTGGCCTGTAA 8422 Score = 140 bits (154), Expect = 7e-29 Identities = 271/389 (70%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 12795 CCGGAGGATCAGCAGGCGGAAATCGC-CGCCCGCCTCGCCCTGGAGTCCGAACCGCTGAC 12853 ||||| || ||||||| | |||||| ||| ||| | | || |||||||| |||||| Sbjct 2820 CCGGAAGACCAGCAGGACGCAATCGCGCGCACGC-TGTCGCTTGAGTCCGAGCCGCTGGT 2878 Query 12854 CAAGCTGCTCGAGGAAAACGCATACCGCGAAATGCTCTGGCGCCAGCGGGTCAACGAGGC 12913 |||||||| |||||||||| ||||| ||| | ||||||| ||||| ||||||||||| Sbjct 2879 GAAGCTGCTGCAGGAAAACGCCTACCGGGAAGTTATCTGGCGACAGCGCGTCAACGAGGC 2938 Query 12914 GGCTCTCGCCAACATGCTGGCCAGCGC-CCAGGGCGCTGACCTCGACCAGCTCGCCGCGA 12972 || | || |||||||||| ||| |||| || ||||| |||||| | | || | Sbjct 2939 CGCGCGTGCGGTCATGCTGGCCTACGCTGCAGGAAGC-GACCTTGACCAGATAGGCGGAA 2997 Query 12973 ACTACAACGTCAAGCGCCTGGTCATCCAGCCTGGAGATCCGTCGAAGGTGCCGCCCGTGC 13032 | |||||||| ||||||| || ||| |||| ||| ||| | | ||||| || Sbjct 2998 ATTACAACGTTGAGCGCCTTGTTATCACCCCTGCAGACGACACGACGTTACCGCCGACGC 3057 Query 13033 CGGAACTGCTGGAGTCCGACGACAGCCT-GCGCGAGCGGGCGCAGATGGCCTGGGAAGGC 13091 | | || ||||||| ||| || | || || ||| ||| ||||| || || Sbjct 3058 CTGCCGTGATGGAGTCGGAC-ACCGACTACCGTCTGCGCATTCAGCAGGCCTTTGAGGGG 3116 Query 13092 CTCAGCACCGCGGGACCGCGTAACAGCTAC-ATC--TTCCACGCCCGCGCCGCCGACGGT 13148 || || ||||| || | || | ||| | ||| || |||| ||| ||| ||||| Sbjct 3117 CTGAGTACCGCAGGCTC---TACCGGCTCCTATCAGTTTCACGGTCGCAGCGCTGACGGG 3173 Query 13149 CGCGTCGGCGATGCCTCGGCCGTCAGCCC 13177 || |||| |||| |||| | |||| || Sbjct 3174 CGGGTCGCCGATATTTCGGTCATCAGTCC 3202 Score = 84.2 bits (92), Expect = 5e-12 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 13705 CTGCCCGGTCGCCCTTCTGCCGTACCTGGCCTGGGCGTTCTCCGTCGATCGCTGGGACAG 13764 |||||||| || ||||||| ||||| |||||||| ||||| || ||||||||| Sbjct 3735 CTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCCGTTGACCGCTGGGACGA 3794 Query 13765 CACCTGGCCGGAGCGTGTGAAGCGCCAGGTCATTCGGGATGCCTACCTCGTCCACTCCCA 13824 | |||||||||| ||||| | || || || | || | | |||| | || Sbjct 3795 GAACTGGCCGGAGGCCACAAAGCGGGATGTGATCCGCGCGGCGTGGTTTATCCATGCGCA 3854 Query 13825 CAAGGGAACCTTGAGCGCCCTGCGCCGCGTGGTCGAGCCCGTCGGCTCGCTGACCGACAT 13884 ||| ||||| | | || ||||||||||||| |||||| |||||| |||| || | Sbjct 3855 CAAAGGAACGATTGGGGCAGTGCGCCGCGTGGTGGAGCCCCTCGGCTACCTGATTAACGT 3914 Query 13885 CCTCGAGTGGTGGCAA 13900 ||||||||| || Sbjct 3915 GTCGGAGTGGTGGGAA 3930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113731977030776