Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq960 253 7e-63 >seq960 Length=33163 Score = 253 bits (280), Expect = 7e-63 Identities = 906/1397 (65%), Gaps = 46/1397 (3%) Strand=Plus/Plus Query 17286 GATCGTGGGGCTGGTGAATGGCCTGCAGTCGGTCTATCTCGACGGCACACCGATCCAGAA 17345 ||||||||| ||| ||| ||| || ||||| | ||| ||| || || | || Sbjct 12409 GATCGTGGGCCTGAAGAACGGCAAGCGCTCGGTGTTCCTCAACGAGACGCCCCTGGCCAA 12468 Query 17346 CGCGGACGGTTCGCTGAATTTC-CAGAACTACACCGTCGACGTGCGGACGGGCACGCAGG 17404 ||| ||||| ||||| ||| | | | || | |||| || | |||| |||| Sbjct 12469 CGCCGACGGCAGCCTGAACTTCTCCGGGGT-CAGCCTCGAGACCCGCAACGGCAGCCAGG 12527 Query 17405 ATCAGGACTACATCCCGGGCTTTCCGGCCGTCGAGCGTGAGGCCGGCGTCGGCGTGCCGC 17464 | ||| ||||||||||||||||||||| || ||| ||| || || | ||| | Sbjct 12528 ACCAGACCTACATCCCGGGCTTTCCGGCGGTGGAGAACGAGTCCCAGGTGGCGGTGGAAC 12587 Query 17465 TGACGTCCGACGCGCCGTGGGTGCGCCAGATCCAGAATACGCAACTGACCGCGGTGCGTG 17524 || |||| || ||| ||| ||| || ||||||| | |||||||| Sbjct 12588 TGCGCAGCGACCAACCCTGGACCCGCGCCATCACCAACCTGCAACTGTCGGCGGTGCGCA 12647 Query 17525 TGCGCTTCGGCGTGCCGGCGCTACAGCGTCAGGACA-CGTCA--AATGGCAACATCACAG 17581 | ||| | |||| | |||| | | ||| || | || || ||| ||| || | Sbjct 12648 TCCGCCT-GGCGGTCTCGCGC--CTGGCCCAGACCAACACCAGCAACGGCGACACCAACG 12704 Query 17582 GCTATCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGGTCGTATACGCAGGTGC 17641 |||| || || || ||||| |||| |||||||||| ||| | |||| Sbjct 12705 GCTACACGGTGCGTTACGCCATCGAGCTGTCCACCGACGGCGGGGCGTTCGTCGAAGTGC 12764 Query 17642 TGGCCGGT--GCGTTCGACGGCAAGACGACGTCGCTCTACGAGCGCTCGCATCGGATCGA 17699 || | || || ||| |||||||| | ||||||||||| || ||| |||| Sbjct 12765 TG--CAGTCGGCCTTCAGCGGCAAGAGCTCCAGCAAGTACGAGCGCTCCCACCGGGTCGA 12822 Query 17700 GCTGCC-GCGCGCGAAAAACGGCTGGCTGATCCGTGTGCGCCGTATCACGCCGAACGCGC 17758 ||||| ||| || || ||||||| | || ||||| || | ||| ||||| | Sbjct 12823 CCTGCCAGCG-GCCAAGGCCGGCTGGACCGTGCGGGTGCGGCGGCTGACGGCGAACTCCA 12881 Query 17759 ACACGGCGACGATCGCCGACGCGATCAACATCGAAGCGATCACCGAAATCATCGATCGGA 17818 || | | |||||||||| | | || | | || | |||||||| | ||||| | Sbjct 12882 GCAGCGGGGCGATCGCCGATACCACCAGCGTGGAGTCCATCACCGACGTGATCGACGCCA 12941 Query 17819 AGCTTCGCTATCCGATGACGGCGCTCGTCGGCATGACGTTCGACGCACGTTCGTTC---T 17875 || | ||||| ||| ||||| || ||||| || |||||| || |||| | Sbjct 12942 AGTTGCGCTACCCGGGTTCGGCGATCATCGGCCTGCAGTTCGATGCCTCGCAGTTCCAGT 13001 Query 17876 CGAG--CGTGCCGGTGCGTTCGTATCACGTGCGAGGGATGATCTTCCGTGTTCCGACAAA 17933 ||| | ||| | | |||| || ||| |||| |||| |||| || || | || Sbjct 13002 CGATTCCCAACCGCTCC-TTCGAAT----TGCAAGGGCGGATCATCCGCGTGCCAAGCAA 13056 Query 17934 TTACGATCCGGAGACCCGCACGTATTCGGGCACTTGGGATGGCACGTTCAAGGCAGCATG 17993 |||||||||| ||||| || || ||| ||||| ||||| |||||| | || || Sbjct 13057 CTACGATCCGGCCACCCGGACCTACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCCTG 13116 Query 17994 GACGAACAATCCAGCTTGGGTCTACTACGGCCTACTGCTCGACAAGCTCAACGGATTGGG 18053 ||| |||| || || ||| ||||||||| ||| ||||| || ||| | || | || Sbjct 13117 GACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTCGG 13176 Query 18054 CGACCGTGTCGATGCGTCGATGGTCGACAAGTGGGCGCTGTACGCAATCGCGCGTCACTG 18113 ||| || | || | ||| |||||||||| ||||||| |||| | |||| Sbjct 13177 GCACCTGCTCAACGCCGCCCAGGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTG 13236 Query 18114 TGACGAGCTGGTATCGGACGGGAAGGGCGGCAAGGAGCCGCGCTTTACGTGCAACTGCGT 18173 ||| ||| ||| || || || |||||||||| |||||||||||||| |||||| | Sbjct 13237 CGACCAGCCGGTGTCCGATGGCAAGGGCGGCACCGAGCCGCGCTTTACCTGCAACCTCTA 13296 Query 18174 GATTCAGACAAAGGCGGATGCGTTCAAGGTCGTGCAGGATATCGCAAGTGTCTTTCGCGG 18233 | | || |||||| | || || ||||||| | || | ||| ||||| Sbjct 13297 TCTCTCGGTGCGCGCCGATGCGCTGAAAGTGCTGCAGGACCTGGCCACCACCTTCCGCGG 13356 Query 18234 GATTTCGTATTGGGGGGCCGGCTCCGTCGTCGCGTCGGCCGATATGCCGTCCGATCCGGT 18293 || | |||||||| || ||||| || | ||| |||||| |||||| || ||||| Sbjct 13357 CATGGCCTATTGGGGCGCAGGCTCGGTGATGGCGGTGGCCGACATGCCGGAAGACCCGGT 13416 Query 18294 CTACCTGTACACGGCCGCGAACGTCGTCGGCGGTTCATTCAAGTACGTCGGCAGCGAGCG 18353 ||| |||| ||| ||||| ||| ||| ||| |||| ||| | | Sbjct 13417 GTACACCTACAGCAACGCCAACGTGATCGACGGCAAGTTCGTCTACGGTGGCTCGGCGAA 13476 Query 18354 CAAGACGCGCTACACGGTCGCGCTCGTCAGCTACAACGATCCGACGAACCAGTACAAGCA 18413 ||||| ||||||| || || || || |||| ||||| ||| || || ||| ||| Sbjct 13477 AAAGACCCGCTACAGCGTGGCCCTGGTGAGCTGGAACGACCCGGCGGACTTCTACCGGCA 13536 Query 18414 GGCTGTCGAAGCCGTGCAGGACGACGAC---------GGGATCGCGCGATACGGCGT-CA 18463 |||| |||||| ||| |||| || ||||| || || ||||| || Sbjct 13537 -------GAAG--GTGCAGTACGTCGACGATCCGGAAGGCATCGCCCGTTATGGCGTGCA 13587 Query 18464 TCAAGACGGAGGTCACGGCGTTCGGCTGCACGTCGCAGGCGCAGGCGCACCGTCTCGGTC 18523 | |||| ||| |||| || ||||||||| || ||||| ||||| || || |||| Sbjct 13588 GC-AGACCGAGATCACCGCCACCGGCTGCACCTCCCAGGCCCAGGCCCAGCGCATCGGCA 13646 Query 18524 GGTGGCTGCTGCTGACGTCGCGGTACGAGACCGGGACGGTCTCGTTTCAGGTCGGGCTCG 18583 ||| ||||||||| || || |||| | || ||| || || || | Sbjct 13647 AATGGGCGCTGCTGACCAACCGCCTGGAAACCGAAAGCGTGAGTTTTTCTGTGGGCCTGG 13706 Query 18584 ACGGGACGCTTTGTGCG-CCGGGACAGGTGATCGCCGTTGCCGACCCTAAGAAGGCCGGC 18642 |||| || | | ||||| ||||| ||||||||| ||| || ||| | ||||||| Sbjct 13707 ACGGAAC-CCTGGTGCGTCCGGGGCAGGTGATCCGCGTGGCGGACAACGACCGGGCCGGC 13765 Query 18643 CGCCGGATCGGCGGCCG 18659 || ||||||||||| || Sbjct 13766 CGGCGGATCGGCGGGCG 13782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170668364046380