Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq486 354 1e-92
seq65 98.7 1e-15
>seq486
Length=217039
Score = 354 bits (392), Expect = 1e-92
Identities = 1051/1608 (65%), Gaps = 26/1608 (2%)
Strand=Plus/Plus
Query 62035 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094
||||||| | |||||||| || | | || || || ||||||| ||| |||||||
Sbjct 174754 CCTTGTCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTC 174813
Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154
| || || | || | |||| | || ||||| || || | ||| ||| | |
Sbjct 174814 CAGTCTTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTG 174873
Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214
| ||||||| |||||| || | |||||||| || || ||||| || || | || || |
Sbjct 174874 GTTCTGCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGG 174933
Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 62273
|||||| || | ||||| | || ||||| | ||| || |||| || |||| |
Sbjct 174934 CCATTTGGATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTATT- 174992
Query 62274 TCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330
|||| |||| || | | ||||||||||||| | ||||| ||| ||
Sbjct 174993 TCTTTGGGAATACTTTCAATAGACTGAATGGATCCATTGTTGTGTATAATGAGATTTTTC 175052
Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390
|| ||||||| |||||| | |||||| | | | | ||| || || |||| || ||
Sbjct 175053 ATATCATCATCCCATAAATCAGCCTCGGTGAGATCGCGAAGCAGGTGATGGTTGACCACC 175112
Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450
|||||||||||||| | ||||| | |||||| || || | || || | ||
Sbjct 175113 TGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGAT 175172
Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510
||||| || || | ||| || ||||| || || || ||||| || |||| ||| | |
Sbjct 175173 TCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAG 175232
Query 62511 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570
|| | || || | | | ||| || | || ||| ||| | ||| || || |
Sbjct 175233 TTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTGTG 175292
Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629
||| |||||| | || || | |||||| | || | || ||||
Sbjct 175293 GGTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCCGGACAA-CCAGCATA 175351
Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689
|| ||||| || || || || |||| ||| || || ||||| || || |||||
Sbjct 175352 CGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATA 175411
Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749
||||||||||| || | | ||| || | || ||| | || || | |||
Sbjct 175412 GATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAGGAAGGCG 175471
Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809
| | | ||| || || || | ||||| || ||||| |||||||||| || ||| |
Sbjct 175472 CATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCAT 175531
Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869
||||| ||| |||||||| | ||||| ||||||| ||| ||||| || || || ||
Sbjct 175532 GTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTT 175591
Query 62870 TCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA--- 62925
|| | || | |||| ||| | || ||||| ||||||| || || |
Sbjct 175592 -CTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATTTTCGG 175650
Query 62926 TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985
||||||||||||| | |||| || |||| || || || ||||| |||| |||| |
Sbjct 175651 TTACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATG 175710
Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045
|| | | ||||| ||||| ||||| || || ||||| ||||| ||||| | |||||
Sbjct 175711 TGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGAT 175770
Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105
| |||||| |||| || ||||| || ||||| ||| ||||||| ||||| || | || |
Sbjct 175771 TGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTG 175830
Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCTCCT 63160
|| ||||| || ||||| | || | |||| |||| ||| | | | || |
Sbjct 175831 CCTCAATAATAGCCTTCCATAGGATTTGAGCGCGGACTTTTTTA-ACA----AACCTACC 175885
Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220
|||| ||| ||| ||| ||| || || || ||||||||| || |||| |
Sbjct 175886 TTCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCCCCAACAATCAGCCAAGCC 175945
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| | || | || ||||| | |||||| ||| | || || | ||||| ||
Sbjct 175946 AGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGAA 176005
Query 63281 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339
||||| | ||||| ||||| ||| || || |||| | | |||||| || || |
Sbjct 176006 TAGATCTGAGATCCACAGAGC-ATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCG 176064
Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399
| ||||| || | || |||||| | | || |||| |||||||| || | ||| | ||
Sbjct 176065 TGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGG 176124
Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459
| | | || ||||| ||||| || ||||| || | ||| | || ||||| || || |
Sbjct 176125 CGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACA 176184
Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519
| | || ||| || | | ||||| || | || || || || | ||| ||| ||
Sbjct 176185 CGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTT 176244
Query 63520 TGGCACGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
| || | || | || ||| | ||||| || || || ||| || ||||||||
Sbjct 176245 TCGCTCTGATGCAATGAACATGA-ACTCCTATGCCGCCCGCGGATTTGGATATTAATGCA 176303
Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626
|| | || | ||||| ||||| ||||| ||||| || || |||||
Sbjct 176304 CACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATG 176351
>seq65
Length=1244346
Score = 98.7 bits (108), Expect = 1e-15
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932
|||||||| ||||| | || || ||||| || || ||||||||||| |||||||| ||
Sbjct 630964 TACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCTTCA 630905
Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992
|| | |||||||| | || | ||| | | || ||||| || || ||||||
Sbjct 630904 GTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCAGAA 630845
Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026
|| ||||| || ||||| |||||||| |||||||
Sbjct 630844 GCAGCAAAGAATGCCAAGACATGTTTGATAAAAT 630811
Score = 84.2 bits (92), Expect = 3e-11
Identities = 154/225 (68%), Gaps = 7/225 (3%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| || ||||| || || || ||||||||||| || || | |||||
Sbjct 631695 CCTCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTT 631636
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
||||||| || ||||| ||||| || || |||||||| || || ||||| || || |
Sbjct 631635 TAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATG 631576
Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33778
| | | ||| || || | | || ||| || ||||||| ||||| ||
Sbjct 631575 CTACTATTCTTTCACC--GAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTC 631518
Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823
|||||||| |||||||| || | || || | ||||| || ||
Sbjct 631517 AGCCTTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAG 631473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629803476340320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |