Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq960 125 2e-24 >seq960 Length=33163 Score = 125 bits (138), Expect = 2e-24 Identities = 291/429 (68%), Gaps = 10/429 (2%) Strand=Plus/Plus Query 30361 AGCGATTCATCATGACAGAGCAGCAGACCCTTTT-ATCTCACGGCGTGGCGACGGCTTAT 30419 |||| |||| | |||| |||| ||| | || | | || ||||| | || || || || Sbjct 18282 AGCGTTTCACCCTGACCGAGCGCCAGTCGCTGCTCAACT-ACGGCATCGCCACCGCCTAC 18340 Query 30420 GTGGAAGGCGGC-ACGTTGCGGATCCAGCGTTCCGTAACCACATACAAAAAGAATGCATA 30478 ||||||||| |||| ||| ||||||||||| | || || ||| | ||||| || | Sbjct 18341 TACGAAGGCGGCTACGT-GCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTT 18399 Query 30479 TGGCGTGGCAGACAACAGCTATCTGGACAGTGAAACACTGCATACCAG--CGCATATGTT 30536 ||| ||| |||||| ||| |||||||| || || |||| ||||| || || | Sbjct 18400 CGGCCAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGC--ACCAGTCGGCCTACATC 18457 Query 30537 CTTCGCAAACTGAAATCGGTCATCACAAGCAAGTACGGACGCCACAAGCTGGCAAATGAT 30596 | ||| ||| || || ||||| ||||||||||| ||||||||| |||| ||| Sbjct 18458 GTGCGCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGAT 18517 Query 30597 GGTACCCGTTTTGGTCCTGGGCAGGCGATTGTTACTCCTGCCGTTATCAAAGGGGAGCTT 30656 || ||||| || || | || ||| |||| || || || | || || ||||| Sbjct 18518 GGCACCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTCGCGGCGAGCTG 18577 Query 30657 CTGGCGACATATCGTC-AGATGGAGCGTGCCGGTATTGTGGAAAATTACGATCTGTTTAA 30715 | || || || | || |||||| | || ||||||||| ||| ||||| Sbjct 18578 ATCGC-CCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGC 18636 Query 30716 ACAGTATCTGATAGTTGAGCGTGATGCGGATAACCCGAACCGACTGAACACGCTGTTCCC 30775 || | ||| | || || || ||||| |||||||||| | ||| ||||||||| Sbjct 18637 CGAGCACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCC 18696 Query 30776 GCCGGATTA 30784 |||||| || Sbjct 18697 GCCGGACTA 18705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136115500167636