Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq486 221 1e-52 >seq486 Length=217039 Score = 221 bits (244), Expect = 1e-52 Identities = 710/1096 (65%), Gaps = 12/1096 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||||| ||| | |||| || | || || | | ||||||||||||||| Sbjct 174759 TCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTCCAGTC 174818 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| | |||| | || ||||| || |||| |||| | || | || | Sbjct 174819 TTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTGGTTCT 174878 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | ||||||||| || || || || ||||| | || || |||||| Sbjct 174879 GCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCCATT 174938 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | || |||||||||||| || || || || | | | |||| || | | Sbjct 174939 TGGATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTAT-TTCTTT 174997 Query 37030 GGTAAATCTA--AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085 || || || ||| ||||| || ||||| | | ||| ||| || || || Sbjct 174998 GGGAATACTTTCAATAGACTGAATGGATCCATTGTTGTGTATAATGAGATTTTTCATATC 175057 Query 37086 ATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 || || ||| | || | | | | || || | | ||||| | || || ||||| Sbjct 175058 ATCATCCCATAAAT--CAGCCTCGGTGAGATCGCGAAGCAGGTGATGGTTGACCACCTGG 175115 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || |||||||| | ||||||||| || || || ||| |||| |||| || ||| Sbjct 175116 AATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATTCA 175175 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | | || || | || || || || ||||| || || | | || || Sbjct 175176 TTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGTTC 175235 Query 37264 CTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGG 37323 | || |||||| | || ||| || || || |||| ||||| | ||||| || Sbjct 175236 CGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTGTGGGT 175295 Query 37324 TTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 ||||| |||||| |||||||| | || |||| ||| || ||| || | ||| || Sbjct 175296 GTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCCGGACAACCAGCATACGTT 175355 Query 37384 TCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATT 37443 |||||| ||| ||| || ||||| || |||| ||||| || ||||||| || Sbjct 175356 TCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATAGATG 175415 Query 37444 GTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT 37503 ||||| || |||||| ||| | | | ||| |||| || ||| | | | || || Sbjct 175416 GTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAGGAAGGCGCATC 175475 Query 37504 AATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTA 37563 |||| ||| |||| |||| ||| || || || || || || |||| || || | ||| Sbjct 175476 AATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCATGTTA 175535 Query 37564 GATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTA 37623 || | || |||| || ||||| ||||| | ||| || || || || || || | | Sbjct 175536 GACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTTCTCA 175595 Query 37624 ACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT---TAACA 37680 || ||||| || | | | | | || || || | || ||||| | | ||| Sbjct 175596 GTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATTTTCGGTTACA 175655 Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT 37740 || | | | | ||| || | | || || ||||| |||||||| | | | Sbjct 175656 AACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATGTGTAC 175715 Query 37741 TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGAT 37800 | | |||||| || || ||||| || || | || ||||||||||| |||||||| Sbjct 175716 TCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATTGCTC 175775 Query 37801 TTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCG 37860 ||| | || || | |||||| || || || || || ||||| |||| ||| ||||| Sbjct 175776 TTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTGCCTCA 175835 Query 37861 ATAATAGATTTCCATA 37876 ||||||| ||||||| Sbjct 175836 ATAATAGCCTTCCATA 175851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514293331360