Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq486 331 1e-85 seq65 93.3 6e-14 >seq486 Length=217039 Score = 331 bits (366), Expect = 1e-85 Identities = 1045/1608 (65%), Gaps = 26/1608 (2%) Strand=Plus/Plus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 ||||||| | |||||||| || | | || || || ||||||| ||| ||||||| Sbjct 174754 CCTTGTCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTC 174813 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || | || | |||| | || ||||| || || | ||| ||| | | Sbjct 174814 CAGTCTTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTG 174873 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | ||||||| |||||| || | |||||||| || || ||||| || || | || || | Sbjct 174874 GTTCTGCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGG 174933 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 65066 |||||| || | ||||| | || ||||| | ||| || |||| || |||| | Sbjct 174934 CCATTTGGATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTATT- 174992 Query 65067 TCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 |||| |||| || | | ||||||||||||| | ||||| ||| || Sbjct 174993 TCTTTGGGAATACTTTCAATAGACTGAATGGATCCATTGTTGTGTATAATGAGATTTTTC 175052 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || ||||||| |||||| | |||||| | | | | ||| || || | || || || Sbjct 175053 ATATCATCATCCCATAAATCAGCCTCGGTGAGATCGCGAAGCAGGTGATGGTTGACCACC 175112 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || ||||||||||| | ||||| | |||||| || || | || || | || Sbjct 175113 TGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGAT 175172 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 ||||| || || | ||| || ||||| || || || ||||| || |||| ||| | | Sbjct 175173 TCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAG 175232 Query 65304 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 || | || || | | | ||| || | || |||| ||| | ||| || || | Sbjct 175233 TTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTGTG 175292 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 65422 ||| ||| | || || | |||||| | || | || |||| Sbjct 175293 GGTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCCGGACAA-CCAGCATA 175351 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 || || || || || || || |||||||| || || ||||| || || ||||| Sbjct 175352 CGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATA 175411 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 |||||||| || || | | ||| || | || ||| | || || | ||| Sbjct 175412 GATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAGGAAGGCG 175471 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | | | ||| || || || | ||||| || ||||| |||||||||| || ||| | Sbjct 175472 CATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCAT 175531 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 ||||| ||| |||||||| | ||||| ||||||| ||| ||||| || || || || Sbjct 175532 GTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTT 175591 Query 65663 TCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA--- 65718 || | || | |||| ||| | || ||||| ||||||| || | || | Sbjct 175592 -CTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATTTTCGG 175650 Query 65719 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778 ||||||||||||| | |||| || |||| || ||||| ||||| |||| |||| | Sbjct 175651 TTACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATG 175710 Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838 || | | ||||| ||||| ||||| || || ||||||||||| ||||| | ||||| Sbjct 175711 TGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGAT 175770 Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898 | |||||| |||| || ||||| || ||||| ||| ||||||| ||||| || | || | Sbjct 175771 TGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTG 175830 Query 65899 ATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCTCTT 65953 || ||||| || ||||| | || | |||| |||| ||| | | | || Sbjct 175831 CCTCAATAATAGCCTTCCATAGGATTTGAGCGCGGACTTTTTTA-ACA----AACCTACC 175885 Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 |||| ||| ||| ||| ||| || || || ||||||||| || |||| || Sbjct 175886 TTCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCCCCAACAATCAGCCAAGCC 175945 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 ||| | || | || ||||| | |||||| ||| | || || | ||||| || Sbjct 175946 AGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGAA 176005 Query 66074 GAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 ||||| | ||||| ||||| ||| || | |||| | | |||||| || || | Sbjct 176006 TAGATCTGAGATCCACAGAGC-ATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCG 176064 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 | ||||| || | || |||||| | | || ||| |||||||| || | ||| | || Sbjct 176065 TGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGG 176124 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | || ||||| ||||| || ||||| || | ||| | || ||||| || || | Sbjct 176125 CGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACA 176184 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 | | || ||| || | | || ||||| || || || || | ||| ||| | || Sbjct 176185 CGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTT 176244 Query 66313 TTGCACGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 | || | || | || ||| | ||||| || || || ||| || |||||||| Sbjct 176245 TCGCTCTGATGCAATGAACATGA-ACTCCTATGCCGCCCGCGGATTTGGATATTAATGCA 176303 Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 66419 || | || | || || ||||| || || || || || ||| ||||| Sbjct 176304 CACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATG 176351 >seq65 Length=1244346 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| ||||| | || || ||||| ||||| ||||||||||| |||||||| || Sbjct 630964 TACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCTTCA 630905 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 || | || ||||| | || | ||| | | || ||||| || || || ||| Sbjct 630904 GTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCAGAA 630845 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 36602 || ||||| || ||||| |||||||| ||||||| Sbjct 630844 GCAGCAAAGAATGCCAAGACATGTTTGATAAAAT 630811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158040474960