Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq170 89.7 4e-13 seq117 84.2 2e-11 >seq170 Length=689707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 21003 TGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 || || |||| || || || || ||||||||||| ||||| || || || || |||||| Sbjct 654314 TGTGCTATCATATGGGTGAGCAGAGCGTAGCTGGCTATGTTGAATGGCACACCCAGGCCC 654255 Query 21063 ATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGA 21122 ||||| || || ||||||||| | ||||| |||| || | ||||||| ||||| Sbjct 654254 ATGTCTGCACTCCGCTGGTACAGTAGACAGGAGAGCTTGCCACTGGCCACGTGGAACTG- 654196 Query 21123 CACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCA 21181 | ||| | ||||| || || | ||||| | | || || | |||||||| || || Sbjct 654195 CGCAAGGCAATGACATGGTGGCAATGCCATTTGTCCAAGATCTGATGGGTTCCATGCACA 654136 Query 21182 CAT 21184 ||| Sbjct 654135 CAT 654133 >seq117 Length=882221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 21003 TGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 || || |||| || || || || ||||||||||| ||||| || || || || |||||| Sbjct 413046 TGTGCTATCATATGGGTGAGCAGAGCGTAGCTGGCTATGTTGAATGGCACACCCAGGCCC 413105 Query 21063 ATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGA 21122 ||||| || || ||||||||| | ||||| |||| || | ||||||| ||||| Sbjct 413106 ATGTCTGCACTCCGCTGGTACAGTAGACAGGAGAGCTTGCCACTGGCCACGTGGAACTG- 413164 Query 21123 CACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCA 21181 ||| | ||||| || || | ||||| | | || || | |||||||| || || Sbjct 413165 TGCAAGGCAATGACATGGTGGCAATGCCATTTGTCCAAGATCTGATGGGTTCCATGCACA 413224 Query 21182 CAT 21184 ||| Sbjct 413225 CAT 413227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766646945120