Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq986 946 0.0 seq960 172 1e-38 seq1102 109 1e-19 >seq986 Length=30461 Score = 946 bits (1048), Expect = 0.0 Identities = 979/1282 (76%), Gaps = 0/1282 (0%) Strand=Plus/Plus Query 19151 TTGCTTTCAATATAGATTCTGCCTATATATTCACCGAGAACACCAATCCCGATCAGTTGC 19210 |||||||| ||||| || || || || || || ||||| |||||||| ||||| |||||| Sbjct 11774 TTGCTTTCGATATAAATCCTTCCAATGTACTCTCCGAGCACACCAATGCCGATAAGTTGC 11833 Query 19211 ACTCCACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCA 19270 || ||||| | |||||| || || ||||| | || ||||| || || || | || ||| Sbjct 11834 ACACCACCAAGGAAAAGGATGGAGACAAGTAATGACGGATAGCCACGCACAGCATTGCCA 11893 Query 19271 AAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAAC 19330 || | || ||||||| |||||||||||| ||||| | ||||| | | |||||||| Sbjct 11894 AAAGCCAGAGTGTCTACAATCATCCATGCGCCATAGAGAAATGCGAGACCTGCAACAACA 11953 Query 19331 AAACCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGT 19390 | || ||||| ||||| | ||| ||||| ||||| || ||||| |||||||| || || Sbjct 11954 AGCCCGATATAGGTCCACATGCGCAGAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGA 12013 Query 19391 GCCAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGT 19450 || || |||||||| ||||| ||||||||||||| |||| |||||||| || ||||| Sbjct 12014 GCAAGGTTCCATAACTTCCAACCATTAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGG 12073 Query 19451 ACATATTCAACGACATCTGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGA 19510 |||||||||| ||||| || ||||||| ||||||||||| | || |||||||| || Sbjct 12074 GCATATTCAACAACATCCGTGCGACCACCAACCCAGCTCAGAACTCCCTTCATGAAGAGG 12133 Query 19511 TTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCT 19570 || | ||| |||| || || ||||| || || |||||||| ||||| || || ||||| Sbjct 12134 TTTCTCTCTGGCATGAGCTTGATGTTTTCGACCACCTCACGGGACATCAGACGGAAATCA 12193 Query 19571 CCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAACTTATAGAACCACTCA 19630 ||||||||||||||||||| ||| | || ||||||||||| ||||||||||||||||| Sbjct 12194 CCGACATTTTCCTCGATCTGCGGGTTACTGATTTTGTTGTGCAACTTATAGAACCACTCG 12253 Query 19631 GCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATG 19690 || | ||||||||||| || | |||||| |||||||| || || || || || |||||| Sbjct 12254 GCAGATTTACGTTTCAGACGACTATCAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATG 12313 Query 19691 TCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATGACCTCAATAGGATCTTGCAGG 19750 || || || |||||||| || || || ||||| || ||||||||||| || || |||| | Sbjct 12314 TCGGCCCCGGCCTGCCATTTCTCTATCAGATGCGGAATGACCTCAATTGGGTCCTGCAAG 12373 Query 19751 TCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCT 19810 || || ||||| || || | || || || | || ||||||| || || ||||| || Sbjct 12374 TCTACGTCAATCGGGATAATTGCTTCACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCA 12433 Query 19811 GGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGTGGGTCTGAAACAGCC 19870 || ||||| ||||||||||| || || || || ||||| || || || |||| || ||| Sbjct 12434 GGCTCTTTTCCAAAGTTGCGGGTGAAGGAAAGAGGAACCACAAGCGGATCTGCAATAGCA 12493 Query 19871 AGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCT 19930 |||||||| |||||||| || || |||||||| || |||||||| ||||| || || || Sbjct 12494 AGCGCGTTTATAATTGATTCGGTCGCATCTTTGCTACCGTCATTGATGAAGACTATCTCA 12553 Query 19931 ACTTCATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCT 19990 ||||| | |||| ||| ||| || || || || | ||| ||||| | || || ||| Sbjct 12554 ACTTCCTGCTGCTTTAACCCTTCAAACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCT 12613 Query 19991 TCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATCCCTAAAGACAA 20050 || |||||||| || || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 12614 TCCTCTTCATTAAACACCGGAACGACCAGAGAAATTTTCATTTCGCATCCCTAAAGACAA 12673 Query 20051 TGAACTTTGAATAGACGAAACCGCACACCAGACTGATGGCGGAGAAGGTGATAAGAGTGA 20110 ||||||||||||||| ||| |||||||||||||||||||||||||| ||| | || | Sbjct 12674 TGAACTTTGAATAGATGAAGCCGCACACCAGACTGATGGCGGAGAAAACGATTAACGTAA 12733 Query 20111 CTATTGGAGGAAGTGAGCATTTATCAGCTGCCCAACCAACAATCACACTCAATATTCCCA 20170 || || | ||| |||| ||||| ||||||||| | |||| | |||| Sbjct 12734 TAATCGGGGCAAGCCCTGATTTGTCAGCACACCAACCAACGGCGGCGCTCAGCGTACCCA 12793 Query 20171 TAAATCCCACGTATAACATGTAGCGCATCGCTGTAGTCGATGCTTTGAATGTGAATCTTG 20230 |||| || || || | |||||||||||| | || || || | || || ||||| || | Sbjct 12794 TAAACCCTACATACAGCATGTAGCGCATGGTCGTTGTAGAAGACTTAAAGGTGAACCTGG 12853 Query 20231 CATTCGCGAAGAAGCTAAAGCTCACAGCCACTACGAAACCTGTGAAGTTTGCCAGAGCCT 20290 | || ||||| |||||||| ||| || ||||| || || | |||||| |||||||| | Sbjct 12854 CGTTTGCGAAAAAGCTAAATGACACCGCAACTACAAATCCGGCGAAGTTAGCCAGAGCTT 12913 Query 20291 GACTGGTATGTGCGGCATAGATACATACACCAAAAACCACCCAGTGTATAAGTGTGTTCA 20350 | | || || | | || ||| | | | || || |||||||| || || ||||| | Sbjct 12914 GCCCTGTGTGGAAGACGTAAATAGAAATGGCGAACACAACCCAGTGAATGAGCGTGTTGA 12973 Query 20351 GCACACCTATAGATGTGTACTTTACAAATAACTTTAACATTTATTTAATCAATGAGCTCT 20410 |||||||| ||||||||| | | ||||||||||||||| ||||| ||| || Sbjct 12974 TAACACCTATTGATGTGTACCTGGCGAATAACTTTAACATTATAGAAATCAGTGAATTCG 13033 Query 20411 GAAAGGCATGAAGTCTATCATC 20432 |||||| |||||| || |||| Sbjct 13034 GAAAGGTCTGAAGTGTAGCATC 13055 >seq960 Length=33163 Score = 172 bits (190), Expect = 1e-38 Identities = 296/425 (70%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 8516 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8575 || ||||| ||||||||| ||| | ||||| | ||| | || || || || | Sbjct 18284 CGTTTCACCCTGACCGAGCGCCAGTCGCTGCTCAACTACGGCATCGCCACCGCCTACTAC 18343 Query 8576 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATGCTTACGGG 8635 ||| |||| ||||||| |||||| |||| || ||| ||| || |||| ||| Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403 Query 8636 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8693 ||||| ||| |||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461 Query 8694 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 8753 || ||| || ||| || ||||| ||||||||||| |||||| | ||| ||| || | Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521 Query 8754 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCG-GCGGTAATCAAAGGGGAACTGCTG 8812 ||||||| || |||| ||| |||| ||||||||| || | || || || ||| | Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTC-GCGGCGAGCTGATC 18580 Query 8813 GCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAG 8872 || ||| |||| |||| | || ||||||||| ||| ||||| || Sbjct 18581 GCCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGAG 18640 Query 8873 TACCTGGTTGTGGAGCGTGATGCCAGCGTTCCGAACCGCCTGAACACGCTGTTCCCGCCT 8932 ||||||| ||||| || |||||| | | ||||||||| | ||| |||||||||||| Sbjct 18641 CACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCCG 18700 Query 8933 GACTA 8937 ||||| Sbjct 18701 GACTA 18705 >seq1102 Length=22075 Score = 109 bits (120), Expect = 1e-19 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 20592 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAG 20651 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 20652 TTA 20654 ||| Sbjct 2214 TTA 2212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118512675181808