Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq986 946 0.0
seq960 172 1e-38
seq1102 109 1e-19
>seq986
Length=30461
Score = 946 bits (1048), Expect = 0.0
Identities = 979/1282 (76%), Gaps = 0/1282 (0%)
Strand=Plus/Plus
Query 19151 TTGCTTTCAATATAGATTCTGCCTATATATTCACCGAGAACACCAATCCCGATCAGTTGC 19210
|||||||| ||||| || || || || || || ||||| |||||||| ||||| ||||||
Sbjct 11774 TTGCTTTCGATATAAATCCTTCCAATGTACTCTCCGAGCACACCAATGCCGATAAGTTGC 11833
Query 19211 ACTCCACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCA 19270
|| ||||| | |||||| || || ||||| | || ||||| || || || | || |||
Sbjct 11834 ACACCACCAAGGAAAAGGATGGAGACAAGTAATGACGGATAGCCACGCACAGCATTGCCA 11893
Query 19271 AAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAAC 19330
|| | || ||||||| |||||||||||| ||||| | ||||| | | ||||||||
Sbjct 11894 AAAGCCAGAGTGTCTACAATCATCCATGCGCCATAGAGAAATGCGAGACCTGCAACAACA 11953
Query 19331 AAACCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGT 19390
| || ||||| ||||| | ||| ||||| ||||| || ||||| |||||||| || ||
Sbjct 11954 AGCCCGATATAGGTCCACATGCGCAGAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGA 12013
Query 19391 GCCAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGT 19450
|| || |||||||| ||||| ||||||||||||| |||| |||||||| || |||||
Sbjct 12014 GCAAGGTTCCATAACTTCCAACCATTAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGG 12073
Query 19451 ACATATTCAACGACATCTGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGA 19510
|||||||||| ||||| || ||||||| ||||||||||| | || |||||||| ||
Sbjct 12074 GCATATTCAACAACATCCGTGCGACCACCAACCCAGCTCAGAACTCCCTTCATGAAGAGG 12133
Query 19511 TTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCT 19570
|| | ||| |||| || || ||||| || || |||||||| ||||| || || |||||
Sbjct 12134 TTTCTCTCTGGCATGAGCTTGATGTTTTCGACCACCTCACGGGACATCAGACGGAAATCA 12193
Query 19571 CCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAACTTATAGAACCACTCA 19630
||||||||||||||||||| ||| | || ||||||||||| |||||||||||||||||
Sbjct 12194 CCGACATTTTCCTCGATCTGCGGGTTACTGATTTTGTTGTGCAACTTATAGAACCACTCG 12253
Query 19631 GCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATG 19690
|| | ||||||||||| || | |||||| |||||||| || || || || || ||||||
Sbjct 12254 GCAGATTTACGTTTCAGACGACTATCAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATG 12313
Query 19691 TCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATGACCTCAATAGGATCTTGCAGG 19750
|| || || |||||||| || || || ||||| || ||||||||||| || || |||| |
Sbjct 12314 TCGGCCCCGGCCTGCCATTTCTCTATCAGATGCGGAATGACCTCAATTGGGTCCTGCAAG 12373
Query 19751 TCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCT 19810
|| || ||||| || || | || || || | || ||||||| || || ||||| ||
Sbjct 12374 TCTACGTCAATCGGGATAATTGCTTCACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCA 12433
Query 19811 GGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGTGGGTCTGAAACAGCC 19870
|| ||||| ||||||||||| || || || || ||||| || || || |||| || |||
Sbjct 12434 GGCTCTTTTCCAAAGTTGCGGGTGAAGGAAAGAGGAACCACAAGCGGATCTGCAATAGCA 12493
Query 19871 AGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCT 19930
|||||||| |||||||| || || |||||||| || |||||||| ||||| || || ||
Sbjct 12494 AGCGCGTTTATAATTGATTCGGTCGCATCTTTGCTACCGTCATTGATGAAGACTATCTCA 12553
Query 19931 ACTTCATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCT 19990
||||| | |||| ||| ||| || || || || | ||| ||||| | || || |||
Sbjct 12554 ACTTCCTGCTGCTTTAACCCTTCAAACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCT 12613
Query 19991 TCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATCCCTAAAGACAA 20050
|| |||||||| || || |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 12614 TCCTCTTCATTAAACACCGGAACGACCAGAGAAATTTTCATTTCGCATCCCTAAAGACAA 12673
Query 20051 TGAACTTTGAATAGACGAAACCGCACACCAGACTGATGGCGGAGAAGGTGATAAGAGTGA 20110
||||||||||||||| ||| |||||||||||||||||||||||||| ||| | || |
Sbjct 12674 TGAACTTTGAATAGATGAAGCCGCACACCAGACTGATGGCGGAGAAAACGATTAACGTAA 12733
Query 20111 CTATTGGAGGAAGTGAGCATTTATCAGCTGCCCAACCAACAATCACACTCAATATTCCCA 20170
|| || | ||| |||| ||||| ||||||||| | |||| | ||||
Sbjct 12734 TAATCGGGGCAAGCCCTGATTTGTCAGCACACCAACCAACGGCGGCGCTCAGCGTACCCA 12793
Query 20171 TAAATCCCACGTATAACATGTAGCGCATCGCTGTAGTCGATGCTTTGAATGTGAATCTTG 20230
|||| || || || | |||||||||||| | || || || | || || ||||| || |
Sbjct 12794 TAAACCCTACATACAGCATGTAGCGCATGGTCGTTGTAGAAGACTTAAAGGTGAACCTGG 12853
Query 20231 CATTCGCGAAGAAGCTAAAGCTCACAGCCACTACGAAACCTGTGAAGTTTGCCAGAGCCT 20290
| || ||||| |||||||| ||| || ||||| || || | |||||| |||||||| |
Sbjct 12854 CGTTTGCGAAAAAGCTAAATGACACCGCAACTACAAATCCGGCGAAGTTAGCCAGAGCTT 12913
Query 20291 GACTGGTATGTGCGGCATAGATACATACACCAAAAACCACCCAGTGTATAAGTGTGTTCA 20350
| | || || | | || ||| | | | || || |||||||| || || ||||| |
Sbjct 12914 GCCCTGTGTGGAAGACGTAAATAGAAATGGCGAACACAACCCAGTGAATGAGCGTGTTGA 12973
Query 20351 GCACACCTATAGATGTGTACTTTACAAATAACTTTAACATTTATTTAATCAATGAGCTCT 20410
|||||||| ||||||||| | | ||||||||||||||| ||||| ||| ||
Sbjct 12974 TAACACCTATTGATGTGTACCTGGCGAATAACTTTAACATTATAGAAATCAGTGAATTCG 13033
Query 20411 GAAAGGCATGAAGTCTATCATC 20432
|||||| |||||| || ||||
Sbjct 13034 GAAAGGTCTGAAGTGTAGCATC 13055
>seq960
Length=33163
Score = 172 bits (190), Expect = 1e-38
Identities = 296/425 (70%), Gaps = 6/425 (1%)
Strand=Plus/Plus
Query 8516 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8575
|| ||||| ||||||||| ||| | ||||| | ||| | || || || || |
Sbjct 18284 CGTTTCACCCTGACCGAGCGCCAGTCGCTGCTCAACTACGGCATCGCCACCGCCTACTAC 18343
Query 8576 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATGCTTACGGG 8635
||| |||| ||||||| |||||| |||| || ||| ||| || |||| |||
Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403
Query 8636 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8693
||||| ||| |||||| ||||||||||| ||||| ||||| || || | |||
Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461
Query 8694 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 8753
|| ||| || ||| || ||||| ||||||||||| |||||| | ||| ||| || |
Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521
Query 8754 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCG-GCGGTAATCAAAGGGGAACTGCTG 8812
||||||| || |||| ||| |||| ||||||||| || | || || || ||| |
Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTC-GCGGCGAGCTGATC 18580
Query 8813 GCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAG 8872
|| ||| |||| |||| | || ||||||||| ||| ||||| ||
Sbjct 18581 GCCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGAG 18640
Query 8873 TACCTGGTTGTGGAGCGTGATGCCAGCGTTCCGAACCGCCTGAACACGCTGTTCCCGCCT 8932
||||||| ||||| || |||||| | | ||||||||| | ||| ||||||||||||
Sbjct 18641 CACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCCG 18700
Query 8933 GACTA 8937
|||||
Sbjct 18701 GACTA 18705
>seq1102
Length=22075
Score = 109 bits (120), Expect = 1e-19
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 20592 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAG 20651
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215
Query 20652 TTA 20654
|||
Sbjct 2214 TTA 2212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118512675181808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |