Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq486 140 3e-28
seq1030 107 2e-18
seq197 102 8e-17
>seq486
Length=217039
Score = 140 bits (154), Expect = 3e-28
Identities = 811/1280 (63%), Gaps = 34/1280 (3%)
Strand=Plus/Plus
Query 153126 AACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTAC 153185
|| || ||||| || || ||||| || || ||||| || | ||| || ||||||
Sbjct 175158 AATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGG 175217
Query 153186 GCCACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAG 153245
|||| | || || || || | || ||||| || ||| ||||| ||||
Sbjct 175218 GCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAG 175277
Query 153246 TCCCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCT 153305
||||| | || ||| || ||||| || ||||||||||| |||| || ||
Sbjct 175278 TCCCACAGGTCTGTGGGTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCC 175337
Query 153306 TTGCTACCGGCAAACGTGCTATA--CGGCTCACTGTCAGACGCCAGTTTCAAACTGGCAT 153363
| ||| ||| |||| ||| || | | | | ||||||| | || || |
Sbjct 175338 GGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCG--GCCAGTTCACAGCTAGCTT 175395
Query 153364 CGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGC 153423
| | || ||| ||| | ||||| | || |||| || || ||| | || |
Sbjct 175396 CTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCAC 175455
Query 153424 TCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTA 153483
|| |||| || | ||||| || ||||| |||||||||| |||||| | ||||||||| |
Sbjct 175456 TCTCGTAAGGAAGGCGCATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGA 175515
Query 153484 TGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGA 153543
| || || || | ||| ||||| ||||| || || || |||||| |||| ||||
Sbjct 175516 TAGGTCGGTGCCTCATGTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGA 175575
Query 153544 TAATTTTATTTAAACTAATCACGACATG--TTTCACCACAGAATGCAACAGTTG---AAA 153598
|||| || || | | ||| | ||| ||| ||| || |||| |||
Sbjct 175576 TAATCTTGTTCAGGTTC-TCA-GTTATGATTTTGGTCACT---TGTTTTAGTTTCTCAAA 175630
Query 153599 ATCAAACGTTCCATTAATGAT---ATATTTGTTGACGGCAATCGACGCCAAGTTGCAAAC 153655
|||| | ||| ||| | | | | ||||||| ||||| |||||||||||||||||
Sbjct 175631 ATCATATGTTTTATTTTCGGTTACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAAC 175690
Query 153656 GGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 153715
|| ||| || | | || | || || |||| || | |||||||||||| ||
Sbjct 175691 AGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGAT 175750
Query 153716 CAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGG 153775
|| |||| |||||||||| || | ||| || || || ||||| |||||||||||
Sbjct 175751 GGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGG 175810
Query 153776 TGTGCCGGTTTCGGCTTGAATTTCTATAATAG--TACGCAT-CAATGTGACCGCGGGCAT 153832
|| || || || |||| || ||||||| | | ||| || ||| ||||| | |
Sbjct 175811 AGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTC-CATAGGATTTGAGCGCGGACTT 175869
Query 153833 TTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACCAGTATTCAAACTCATC-AC 153891
|| | |||| || | | ||| || | | || | ||||| ||||| |
Sbjct 175870 TT--TTAACAAACCTACCTTCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCC 175927
Query 153892 CAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACCA-TCGGCCATTT 153950
| ||| | |||| | || | |||| || ||||| || ||| || | | |
Sbjct 175928 CCAACAATCAGCCAAGC-CAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGT 175986
Query 153951 TCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCT 154010
|| | ||| | ||| |||| ||| | | ||| || || | | ||| || |||||
Sbjct 175987 TC-TCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCTCGCGCG 176045
Query 154011 TTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGC 154070
| || || |||| |||| || || || || || | |||||| |||
Sbjct 176046 CGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGC 176105
Query 154071 CACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGA 154127
||||| || | ||| || || ||||| ||| ||||||||||| | ||||
Sbjct 176106 CACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAG 176165
Query 154128 CGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTA 154187
||| || | |||||| | || || |||||||| | ||| ||| ||| | ||||| ||
Sbjct 176166 CGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTG 176225
Query 154188 GATTTAATCTTGCTG--TTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGC 154245
|| | | || || || ||| | || | || | | ||| || |||||
Sbjct 176226 CCCGCGATGTAGGTGCCTTTCG--CTCTGATGCAATGAACATGAACTCCTATGCCGCCCG 176283
Query 154246 CGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCGC 154305
|| |||||| || | || || | |||| |||| |||||||| ||||| |||
Sbjct 176284 CGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGT 176343
Query 154306 TTTCCATGGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACA 154365
| ||||| | ||||||||||| | ||| || || ||| |||| | ||||
Sbjct 176344 CCTTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGTGGCGGCCGAGAACA 176403
Query 154366 TGGTCGGGCTTGCGTGCGTG 154385
||| ||||| |||||||||
Sbjct 176404 GGGTGGGGCTGGCGTGCGTG 176423
>seq1030
Length=27445
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611
||| || ||||||| ||||| || || || ||||| || ||| || || | ||
Sbjct 2688 CAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATC 2747
Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
|| |||||||||||||| ||||||| || ||||| || || || || || || |||||
Sbjct 2748 CTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 2807
Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731
||| || ||| | | ||| | ||||||| | ||||||||||| ||| | ||
Sbjct 2808 CTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAGGGTGATGGT 2867
Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||| || | || || ||||| || ||||||
Sbjct 2868 CTTGCCCGTAAGGGTCTTCACGAAGATCTGCATA 2901
>seq197
Length=620651
Score = 102 bits (112), Expect = 8e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||||||| | || | |||||||| || |||||||| || ||| |
Sbjct 447650 CCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 447709
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || |||||||||||||| |||| ||||| || || ||||||||
Sbjct 447710 AAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGG 447769
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || ||||| ||| || || | | || | ||||| | | || ||
Sbjct 447770 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACT 447829
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
|| | ||| | ||||| || |||| ||||| ||||| || |||||| ||
Sbjct 447830 TCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCATACCT 447880
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593
|| ||| || || | ||| || || ||||||| || ||||| ||||| ||||| || ||
Sbjct 446246 ATTGCCACCACGGAGACGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTC 446305
Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653
| || |||| || || ||||||||||| || |||| ||||| ||||| || ||
Sbjct 446306 GGACAAGGTGCGACCATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGG 446365
Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| || || || ||||| ||| || |||| | || | ||||| | | ||
Sbjct 446366 GGGAATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTC 446425
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | || | ||||| || |||| || || ||||| || |||||
Sbjct 446426 AACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 446476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496052875764800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |