Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq486 140 3e-28 seq1030 107 2e-18 seq197 102 8e-17 >seq486 Length=217039 Score = 140 bits (154), Expect = 3e-28 Identities = 811/1280 (63%), Gaps = 34/1280 (3%) Strand=Plus/Plus Query 153126 AACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTAC 153185 || || ||||| || || ||||| || || ||||| || | ||| || |||||| Sbjct 175158 AATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGG 175217 Query 153186 GCCACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAG 153245 |||| | || || || || | || ||||| || ||| ||||| |||| Sbjct 175218 GCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAG 175277 Query 153246 TCCCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCT 153305 ||||| | || ||| || ||||| || ||||||||||| |||| || || Sbjct 175278 TCCCACAGGTCTGTGGGTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCC 175337 Query 153306 TTGCTACCGGCAAACGTGCTATA--CGGCTCACTGTCAGACGCCAGTTTCAAACTGGCAT 153363 | ||| ||| |||| ||| || | | | | ||||||| | || || | Sbjct 175338 GGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCG--GCCAGTTCACAGCTAGCTT 175395 Query 153364 CGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGC 153423 | | || ||| ||| | ||||| | || |||| || || ||| | || | Sbjct 175396 CTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCAC 175455 Query 153424 TCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTA 153483 || |||| || | ||||| || ||||| |||||||||| |||||| | ||||||||| | Sbjct 175456 TCTCGTAAGGAAGGCGCATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGA 175515 Query 153484 TGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGA 153543 | || || || | ||| ||||| ||||| || || || |||||| |||| |||| Sbjct 175516 TAGGTCGGTGCCTCATGTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGA 175575 Query 153544 TAATTTTATTTAAACTAATCACGACATG--TTTCACCACAGAATGCAACAGTTG---AAA 153598 |||| || || | | ||| | ||| ||| ||| || |||| ||| Sbjct 175576 TAATCTTGTTCAGGTTC-TCA-GTTATGATTTTGGTCACT---TGTTTTAGTTTCTCAAA 175630 Query 153599 ATCAAACGTTCCATTAATGAT---ATATTTGTTGACGGCAATCGACGCCAAGTTGCAAAC 153655 |||| | ||| ||| | | | | ||||||| ||||| ||||||||||||||||| Sbjct 175631 ATCATATGTTTTATTTTCGGTTACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAAC 175690 Query 153656 GGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 153715 || ||| || | | || | || || |||| || | |||||||||||| || Sbjct 175691 AGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGAT 175750 Query 153716 CAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGG 153775 || |||| |||||||||| || | ||| || || || ||||| ||||||||||| Sbjct 175751 GGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGG 175810 Query 153776 TGTGCCGGTTTCGGCTTGAATTTCTATAATAG--TACGCAT-CAATGTGACCGCGGGCAT 153832 || || || || |||| || ||||||| | | ||| || ||| ||||| | | Sbjct 175811 AGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTC-CATAGGATTTGAGCGCGGACTT 175869 Query 153833 TTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACCAGTATTCAAACTCATC-AC 153891 || | |||| || | | ||| || | | || | ||||| ||||| | Sbjct 175870 TT--TTAACAAACCTACCTTCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCC 175927 Query 153892 CAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACCA-TCGGCCATTT 153950 | ||| | |||| | || | |||| || ||||| || ||| || | | | Sbjct 175928 CCAACAATCAGCCAAGC-CAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGT 175986 Query 153951 TCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCT 154010 || | ||| | ||| |||| ||| | | ||| || || | | ||| || ||||| Sbjct 175987 TC-TCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCTCGCGCG 176045 Query 154011 TTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGC 154070 | || || |||| |||| || || || || || | |||||| ||| Sbjct 176046 CGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGC 176105 Query 154071 CACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGA 154127 ||||| || | ||| || || ||||| ||| ||||||||||| | |||| Sbjct 176106 CACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAG 176165 Query 154128 CGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTA 154187 ||| || | |||||| | || || |||||||| | ||| ||| ||| | ||||| || Sbjct 176166 CGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTG 176225 Query 154188 GATTTAATCTTGCTG--TTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGC 154245 || | | || || || ||| | || | || | | ||| || ||||| Sbjct 176226 CCCGCGATGTAGGTGCCTTTCG--CTCTGATGCAATGAACATGAACTCCTATGCCGCCCG 176283 Query 154246 CGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCGC 154305 || |||||| || | || || | |||| |||| |||||||| ||||| ||| Sbjct 176284 CGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGT 176343 Query 154306 TTTCCATGGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACA 154365 | ||||| | ||||||||||| | ||| || || ||| |||| | |||| Sbjct 176344 CCTTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGTGGCGGCCGAGAACA 176403 Query 154366 TGGTCGGGCTTGCGTGCGTG 154385 ||| ||||| ||||||||| Sbjct 176404 GGGTGGGGCTGGCGTGCGTG 176423 >seq1030 Length=27445 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||||| ||||| || || || ||||| || ||| || || | || Sbjct 2688 CAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATC 2747 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || |||||||||||||| ||||||| || ||||| || || || || || || ||||| Sbjct 2748 CTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 2807 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || ||| | | ||| | ||||||| | ||||||||||| ||| | || Sbjct 2808 CTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAGGGTGATGGT 2867 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| || | || || ||||| || |||||| Sbjct 2868 CTTGCCCGTAAGGGTCTTCACGAAGATCTGCATA 2901 >seq197 Length=620651 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | || | |||||||| || |||||||| || ||| | Sbjct 447650 CCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 447709 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || |||||||||||||| |||| ||||| || || |||||||| Sbjct 447710 AAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGG 447769 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | | || || Sbjct 447770 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACT 447829 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||| || |||| ||||| ||||| || |||||| || Sbjct 447830 TCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCATACCT 447880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | ||| || || ||||||| || ||||| ||||| ||||| || || Sbjct 446246 ATTGCCACCACGGAGACGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTC 446305 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | || |||| || || ||||||||||| || |||| ||||| ||||| || || Sbjct 446306 GGACAAGGTGCGACCATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGG 446365 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| || |||| | || | ||||| | | || Sbjct 446366 GGGAATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTC 446425 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | ||||| || |||| || || ||||| || ||||| Sbjct 446426 AACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 446476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052875764800