Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq486 345 6e-90 seq65 87.8 2e-12 >seq486 Length=217039 Score = 345 bits (382), Expect = 6e-90 Identities = 1021/1566 (65%), Gaps = 18/1566 (1%) Strand=Plus/Plus Query 70828 TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATA 70887 || ||||||| ||| ||||| || || || | || | |||| | || ||||| || Sbjct 174792 TTAGTACGTAAATAATACATTCCAGTCTTCAAGCCCATTTTCCACGCATAGAAATGAATC 174851 Query 70888 CTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCG 70947 || | ||| |||| | || || |||| || || || | || ||||| || || Sbjct 174852 GATGTCAATTTTCCATAGTTTGGTTCTGCTACATGGATGTTAAATGATTGACTCTGGTCA 174911 Query 70948 ATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATA 71007 ||||| || || | || || ||||||| || | ||||| | || ||||| | | Sbjct 174912 ATGAAAGCACCACGATCCGCGGCCATTTGGATTGTGGTCTTCACAGATATCTCCCACACA 174971 Query 71008 GTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACC 71063 || || |||| || |||| | |||| |||| || | | ||||||||||||| Sbjct 174972 GTCTTGTAAAGATCTCTTATT-TCTTTGGGAATACTTTCAATAGACTGAATGGATCCATT 175030 Query 71064 ATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCT 71123 | ||||| |||||| || || |||| |||||| | |||||| | | | | Sbjct 175031 GTTGTGTATAATGAGATTTTTCATATCATCATCCCATAAATCAGCCTCGGTGAGATCGCG 175090 Query 71124 AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 71183 ||| || ||| | || || || || ||||||||||| | ||||| | |||||| || Sbjct 175091 AAGCAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTT 175150 Query 71184 ACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 71243 || | || || | ||| ||||| || || | ||| || ||||| || || || || Sbjct 175151 TGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGG 175210 Query 71244 CATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAGAG 71302 ||| || |||| ||| ||| || | || |||||| ||| ||| || | || |||| Sbjct 175211 CATGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTT-TCGCGATCTTCTGCTTCAGAG 175269 Query 71303 ATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGT 71362 ||| | ||| || || | ||| || || | Sbjct 175270 CACTCCAGTCCCACAGGTCTGTGGGTGTCTTTCCCCACATTTCATATTGCAATATTCCTT 175329 Query 71363 TACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAAC 71422 ||| || | || ||||| || || || || ||||||||| |||||||| | Sbjct 175330 CACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGC 175389 Query 71423 TCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 71482 | || ||||| || |||||||| |||||||| || || | | |||||| | || ||| Sbjct 175390 TAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTC 175449 Query 71483 CCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 | || || | ||| | | | ||| || || || | ||||| ||||||| Sbjct 175450 CTTCACTCTCGTAAGGAAGGCGCATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAA 175509 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 | |||||||||| ||| ||| | ||||| ||| |||||||| | ||||| ||||||| Sbjct 175510 TGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAA 175569 Query 71603 TATCTATAATTTTATTGAGATTTCTGACT-ATTACTTTGACCACATCCTTTAGTTTGAGA 71661 ||| ||||| || || || || || | | || | |||| ||| | |||||||| | Sbjct 175570 CATCGATAATCTTGTTCAGGTT-CTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCA 175628 Query 71662 AAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAA 71718 |||||| || | || | ||||||||| ||| | |||| || |||| || ||| Sbjct 175629 AAATCATATGTTTTATTTTCGGTTACAAACATGTTGACAGCAATTGACGCCAAGTTGCAA 175688 Query 71719 ACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778 || ||||| |||| |||| | || | | ||| || ||||| ||||| || || ||| Sbjct 175689 ACAGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTG 175748 Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838 |||||||| ||||| | |||||| |||||| |||| || ||||| || ||||| || | Sbjct 175749 ATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTAT 175808 Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 71898 ||||| ||||| || | || | || ||||| || ||||| | || | |||| | | Sbjct 175809 GGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTCCATAGGATTTGAGCGCGGACT 175868 Query 71899 ATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 | || | || |||| ||| |||| ||||||| || || || |||||| Sbjct 175869 TTTTTAACAAACCTACCTTCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCCC 175928 Query 71959 CAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCA 72018 ||| || | || ||||| | || | || ||||| | |||||| | | | Sbjct 175929 CAACAATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGTTC 175988 Query 72019 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 72077 | || | ||||| || ||||| | ||||| ||||| ||| || || |||| | | Sbjct 175989 TCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGC-ATAGAACAGCTCTCGCGCGCG 176047 Query 72078 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 72137 ||||| || || || ||||| || | || |||||| | | || |||| ||||| Sbjct 176048 CACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGCCA 176107 Query 72138 CGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 72197 ||| || | ||| | ||| | | || ||||| ||||| || ||||| || | ||| | Sbjct 176108 CGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAGCG 176167 Query 72198 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 72257 || ||||| || || || | || ||| || | | || ||||| | || || || || Sbjct 176168 CGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCC 176227 Query 72258 GGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCC 72315 | ||| ||| | || | || | || | || | ||| | ||||| || || || Sbjct 176228 CGCGATGTAGGTGCCTTTCGCTCTGATGCAATG-AACATGA-ACTCCTATGCCGCCCGCG 176285 Query 72316 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 72375 ||| || |||||||| || | || | || || ||||| || || || || || ||| Sbjct 176286 GATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCC 176345 Query 72376 ATCATG 72381 ||||| Sbjct 176346 TTCATG 176351 >seq65 Length=1244346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || ||||| ||| || || ||||||||||| || || | ||||| Sbjct 631695 CCTCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTT 631636 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 ||||||| || || || || || ||||| |||||||| || || |||||||| || | Sbjct 631635 TAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATG 631576 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 42261 | | | ||| || || | | | ||| || ||||||| ||||| || Sbjct 631575 CTACTATTCTTTCACC--GAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTC 631518 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 |||||||| |||||||| || | || || | ||||| || || Sbjct 631517 AGCCTTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAG 631473 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| ||||| | || || ||||| || || ||||||||||| ||||| || || Sbjct 630964 TACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCTTCA 630905 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || || || ||||| | || | ||| | | || || || || || || ||| Sbjct 630904 GTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCAGAA 630845 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 || ||||| || ||||| |||||||| ||||||| Sbjct 630844 GCAGCAAAGAATGCCAAGACATGTTTGATAAAAT 630811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124149703440