Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_004302.1 Length=33350 Score E Sequences producing significant alignments: (Bits) Value seq1367 453 2e-123 >seq1367 Length=8089 Score = 453 bits (502), Expect = 2e-123 Identities = 427/544 (78%), Gaps = 0/544 (0%) Strand=Plus/Plus Query 29789 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 29848 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 6065 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 6124 Query 29849 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGCTACTTCTTAAGAT 29908 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 6125 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 6184 Query 29909 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 29968 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 6185 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 6244 Query 29969 TATGTATAAATCTCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 30028 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 6245 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 6304 Query 30029 ATTCATGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 30088 || || | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 6305 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 6364 Query 30089 ACTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAGCATTCATATCAGA 30148 ||||||||||||||||||||| || ||||| ||||| ||||| | | || |||||||| Sbjct 6365 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 6424 Query 30149 TGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 30208 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6425 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 6484 Query 30209 ATTATTATTGGAAAATATGCCACAAGTGATGCGTAGTGAGTTGAATGACTTACATGATCA 30268 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 6485 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 6544 Query 30269 AACCGATTCAAACAAGAGCAATATTGACCTTAAAGCAAATTTAGCTGATATGACGAGCTT 30328 ||| || |||||||||||||||||||| |||||||| ||| | | || ||| | ||| Sbjct 6545 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTGAACAACTT 6604 Query 30329 ACAA 30332 |||| Sbjct 6605 ACAA 6608 Score = 185 bits (204), Expect = 2e-42 Identities = 108/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 30681 TTAATCACAAACAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 30740 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6666 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 6725 Query 30741 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCAAACAGTTTACCAC 30792 |||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 6726 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 6777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106596129054336