Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_004313.1
Length=40149
Score E
Sequences producing significant alignments: (Bits) Value
seq960 150 5e-32
seq997 127 5e-25
>seq960
Length=33163
Score = 150 bits (166), Expect = 5e-32
Identities = 287/417 (69%), Gaps = 8/417 (2%)
Strand=Plus/Plus
Query 8765 GAAAGCGGCGTGCTGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGT 8824
||| ||||| |||| || ||||| ||||| || ||| ||| || || | ||
Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403
Query 8825 GTGGCGGATAACAGCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGC 8882
|||||| ||| |||||| ||||||||||| ||||| ||||| || || | |||
Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461
Query 8883 GCCGTCTGAAATCTGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTA 8942
|||| ||| || || || ||||| || ||||||||||| || | || ||||| |
Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521
Query 8943 CGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGAT 9002
| || ||||| | || ||| | || ||||| || | || || || |||||| ||
Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTCGCGGCGAGCTG--AT 18579
Query 9003 CAACATAT-CGCCA-GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCA 9060
| | | ||||| | |||||| ||||||| ||||||||| ||| |||||| |
Sbjct 18580 CGCCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGA 18639
Query 9061 ACATCTGATAGTGGAGCGTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCC 9120
|| ||| | ||||| || | || || |||||||| | | |||||||| |||||
Sbjct 18640 GCACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCC 18699
Query 9121 TGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177
|| || |||| | || ||||| || |||| ||||||||||| ||||||||
Sbjct 18700 GGACTACATCAACGGCCTGCGAGTGTTCGCGCTGCTCAACCAGTTCCGCCTGCAGTA 18756
>seq997
Length=29618
Score = 127 bits (140), Expect = 5e-25
Identities = 269/401 (67%), Gaps = 9/401 (2%)
Strand=Plus/Minus
Query 38075 ACCATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACCGCCAGTCATAGTC 38134
|||| || |||||||||||||| || ||| |||||| |||| |||| | | | |
Sbjct 18184 ACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAAC 18125
Query 38135 TGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCCC 38194
| | | ||| |||| || |||| || ||| || ||||||||||| | || || |
Sbjct 18124 TCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGC 18065
Query 38195 TTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGCG 38254
| ||||| | ||| || || | ||||||||||||| | | ||| | |||
Sbjct 18064 TGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCATA 18005
Query 38255 ATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTGTCGA 38314
|||||| ||||||||| || |||| ||||||| | |||||||| |||
Sbjct 18004 GCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCG------CGA 17951
Query 38315 CAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGCCCGCCCCAGACTGGCAGACT 38374
|| | | ||| | ||| | || ||| |||| || |||||||||| | ||||
Sbjct 17950 ACGG---AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACT 17894
Query 38375 CCGCTCAACGGGATTATTTCACCCTCAAAGAGCGAGTGACAACAATGCAAAAGCAACTGG 38434
||||| ||||||||||||||| ||||| | ||||| | ||| || ||||| | |
Sbjct 17893 CCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCG 17834
Query 38435 AAGGGGCGCAGGACTATATCAGAACACAGTGCCTGAAATAA 38475
|||| |||| || || || |||||| | ||||||
Sbjct 17833 GCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAA 17793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128352465552908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |