Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq960 150 5e-32 seq997 127 5e-25 >seq960 Length=33163 Score = 150 bits (166), Expect = 5e-32 Identities = 287/417 (69%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 8765 GAAAGCGGCGTGCTGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGT 8824 ||| ||||| |||| || ||||| ||||| || ||| ||| || || | || Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403 Query 8825 GTGGCGGATAACAGCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGC 8882 |||||| ||| |||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461 Query 8883 GCCGTCTGAAATCTGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTA 8942 |||| ||| || || || ||||| || ||||||||||| || | || ||||| | Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521 Query 8943 CGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGAT 9002 | || ||||| | || ||| | || ||||| || | || || || |||||| || Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTCGCGGCGAGCTG--AT 18579 Query 9003 CAACATAT-CGCCA-GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCA 9060 | | | ||||| | |||||| ||||||| ||||||||| ||| |||||| | Sbjct 18580 CGCCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGA 18639 Query 9061 ACATCTGATAGTGGAGCGTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCC 9120 || ||| | ||||| || | || || |||||||| | | |||||||| ||||| Sbjct 18640 GCACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCC 18699 Query 9121 TGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177 || || |||| | || ||||| || |||| ||||||||||| |||||||| Sbjct 18700 GGACTACATCAACGGCCTGCGAGTGTTCGCGCTGCTCAACCAGTTCCGCCTGCAGTA 18756 >seq997 Length=29618 Score = 127 bits (140), Expect = 5e-25 Identities = 269/401 (67%), Gaps = 9/401 (2%) Strand=Plus/Minus Query 38075 ACCATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACCGCCAGTCATAGTC 38134 |||| || |||||||||||||| || ||| |||||| |||| |||| | | | | Sbjct 18184 ACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAAC 18125 Query 38135 TGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCCC 38194 | | | ||| |||| || |||| || ||| || ||||||||||| | || || | Sbjct 18124 TCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGC 18065 Query 38195 TTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGCG 38254 | ||||| | ||| || || | ||||||||||||| | | ||| | ||| Sbjct 18064 TGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCATA 18005 Query 38255 ATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTGTCGA 38314 |||||| ||||||||| || |||| ||||||| | |||||||| ||| Sbjct 18004 GCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCG------CGA 17951 Query 38315 CAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGCCCGCCCCAGACTGGCAGACT 38374 || | | ||| | ||| | || ||| |||| || |||||||||| | |||| Sbjct 17950 ACGG---AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACT 17894 Query 38375 CCGCTCAACGGGATTATTTCACCCTCAAAGAGCGAGTGACAACAATGCAAAAGCAACTGG 38434 ||||| ||||||||||||||| ||||| | ||||| | ||| || ||||| | | Sbjct 17893 CCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCG 17834 Query 38435 AAGGGGCGCAGGACTATATCAGAACACAGTGCCTGAAATAA 38475 |||| |||| || || || |||||| | |||||| Sbjct 17833 GCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAA 17793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128352465552908