Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq119 113 4e-20 seq1030 91.5 1e-13 seq176 82.4 6e-11 >seq119 Length=877449 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 || ||||||| || ||||| || || | ||| || ||| |||||||| | || ||| Sbjct 424400 ACATTGCCCAAGTCCCCGACATGGCGGACGGCGTCGCTGGGCGCGCCGTGCGTCTGCTGC 424341 Query 21199 GTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 21258 ||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||| Sbjct 424340 AGCGGGTTGAAGTGCGCGCCGGCGGAGGTGCAGCCGTTGGTGTTGTCCCCGAACTCGTGG 424281 Query 21259 ACGTGAAAGCCGTGC 21273 | ||| ||||||||| Sbjct 424280 ATGTGGAAGCCGTGC 424266 >seq1030 Length=27445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| | ||| ||||||| ||| | ||||| ||||| || || ||||| || Sbjct 2671 TTACCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCG 2730 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | || || | | ||||||||||||||||| || | || |||| |||||| ||| | Sbjct 2731 GACAGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGG 2790 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | ||||| ||||| || || ||| || | ||| || ||| || |||| Sbjct 2791 GGGATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCC 2850 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| ||||| || || || | || || || || || ||||| || Sbjct 2851 ACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATT 2903 >seq176 Length=676275 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 |||||||| || |||||| | ||||| ||| ||| | | || |||| || |||||| Sbjct 84379 GGCGGCGTCGGTCTGAACCTGTGCGGCGCCAACCACCTGCTGCTGCTGGACCCGCACTGG 84320 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAAAAGAAGC 34698 ||||||||| | || | ||||||||| ||||| || ||||| |||| || ||||| Sbjct 84319 AACCCGCAGCTGGAGCAGCAGGCGCAGGACCGTATATACCGCGTGGGGCAGCGGAAGC 84262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414563735624836